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References

  • Arya, M., Shergill, I., Williamson, M, Gommersall, L., Arya, N. and Patel, H. (2005) Basic principles of real-time quantitative PCR. Expert Rev Mol Diagn 5, 209219.
  • Ballesté, E., Bonjoch, X., Belanche, L.A. and Blanch, A.R. (2010) Molecular indicators used in the development of predictive models for microbial source tracking. Appl Environ Microbiol 76, 17891795.
  • Bustin, S.A., Benes, V., Garson, J.A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T. et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55, 611622.
  • Edwards, U., Rogall, T., Blocker, H., Emde, M. and Bottger, E. (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17, 78437853.
  • Fremaux, B., Boa, T. and Yost, C. (2010) Quantitative real-time PCR assays for sensitive detection of Canada goose-specific fecal pollution in water sources. Appl Environ Microbiol 76, 48864889.
  • Gómez-Doñate, M., Ballesté, E., Muniesa, M. and Blanch, A.R. (2012) New molecular quantitative PCR assay for detection of host-specific Bifidobacteriaceae suitable for microbial source tracking. Appl Environ Microbiol 78, 57885795.
  • Green, H., Dick, L., Gilpin, B., Samadpour, M. and Field, K. (2012) Genetic markers for rapid PCR-based identification of gull, Canada goose, duck, and chicken fecal contamination in water. Appl Environ Microbiol 78, 503510.
  • Hagedorn, C., Blanch, A.R. and Harwood, V.J., eds (2011) Microbial Source Tracking: Methods, Applications, and Case Studies. New York, NY: Springer.
  • Kildare, B.J., Leutenegger, C.M., McSwain, B.S., Bambic, D.G., Rajal, V.B. and Wuertz, S. (2007) 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res 41, 37013715.
  • Kobayashi, A., Sano, D., Hatori, J., Ishii, S. and Okabe, S. (2012) Chicken- and duck-associated Bacteroides-Prevotella genetic markers for detecting fecal contamination in environmental water. Appl Microbiol Biotechnol, 111. doi:10.1007/s00253-012-4469-2.
  • Kuboniwa, M., Amano, A., Kimura, K.R., Sekine, S., Kato, S., Yamamoto, Y., Okahashi, N., Iida, T. et al. (2004) Quantitative detection of periodontal pathogens using real-time polymerase chain reaction with TaqMan probes. Oral Microbiol Immunol 19, 168176.
  • Lane, D., Pace, B., Olsen, G., Stahl, D., Sogin, M. and Pace, N. (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82, 69556959.
  • Lu, J., Domingo, J. and Shanks, O. (2007) Identification of a chicken-specific fecal microbial sequences using a metagenomic approach. Water Res 41, 35613574.
  • Lu, J., Santo Domingo, J., Lamendella, R., Edge, T. and Hill, S. (2008) Phylogenetic diversity and molecular detection of bacteria in gull feces. Appl Environ Microbiol 74, 39693976.
  • Lu, J., Santo Domingo, J., Hill, S. and Edge, T. (2009) Microbial diversity and host-specific sequences of Canada goose feces. Appl Environ Microbiol 75, 59195926.
  • Nadkarni, M.A., Martin, F.E., Jacques, N.A. and Hunter, N. (2002) Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148, 257266.
  • Pruesse, E., Quast, C., Knittel, K., Fuchs, B., Ludwig, W., Peplies, J. and Glöckner, F. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 71887196.
  • Ryu, H., Lu, J., Vogel, J., Elk, M., Chávez-Ramírez, F., Ashbolt, N. and Santo Domingo, J. (2012) Development and evaluation of a quantitative PCR assay targeting sandhill crane (Grus canadensis) fecal pollution. Appl Environ Microbiol 78, 43384345.
  • Sharpley, A. (1997) Rainfall frequency and nitrogen and phosphorus runoff from soil amended with poultry litter. J Environ Qual 26, 11271132.
  • USDA (2009) 2007 Census of Agriculture. Washington, DC: United States Department of Agriculture, National Agricultural Statistics Service.
  • USEPA (2003) Clean Watersheds Needs Survey 2000: Report to Congress U.S. Environmental Protection Agency, Office of Wastewater Management, Municipal Support Division, Municipal Policy Branch Washington, D.C. Available at: http://water.epa.gov/scitech/datait/databases/cwns/2000rtc_toc.cfm (Accessed January 2012).
  • USEPA (2008) National Water Quality Assessment Report. Washington, DC: Environmental Protection Agency.
  • USEPA (2012a) National Summary of Impaired Waters and TMDL Information. US Environmental Protection Agency. Available at: http://www.epa.gov/waters/ir/index.html. (Accessed January 2012).
  • USEPA (2012b) TMDL Search: Watershed Assessment, Tracking Results System. US Environmental Protection Agency. Available at: http://www.epa.gov/waters/tmdl/. (Accessed January 2012).
  • Weidhaas, J., Macbeth, T., Olsen, R., Sadowsky, M., Norat, D. and Harwood, V. (2010) Identification of a poultry litter-specific DNA marker gene and development of a 16S rRNA-based quantitative PCR assay. J Appl Microbiol 109, 334347.
  • Weidhaas, J., Macbeth, T., Olsen, R. and Harwood, V. (2011) Quantitative PCR for a poultry-specific Brevibacterium marker gene correlates with bacterial and chemical indicators of water pollution in a watershed impacted by land application of poultry litter. Appl Environ Microbiol 77, 20942102.
  • WVCA (2010) West Virginia's Chesapeake Bay TMDL Watershed Implementation Plan. West Virginia Conservation Agency. Avaialble at: http://www.wvca.us/bay/files/bay_documents/208_WV_Final_WIP_I_Nov_29_2010.pdf. (Accessed October 2011).
  • Zhang, T. and Fang, H. (2006) Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl Microbiol Biotechnol 70, 281289.