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Figure S1 Location and sampling sites in Tai Lake and Yang-cheng Lake in Suzhou city, Jiangsu Province, China.

Figure S2 Standard curves (a) and melting curves (b and c) of quantitative PCR for total Microcystis (16S rDNA) and microcystin-producing Microcystis (mcyA).

Figure S3 Seasonal variations of Cyanobacteria, total and toxic microcystin-producing Microcystis in Tai (T) and Yang-cheng (Y) lakes during 4-month survey.

Figure S4 Spatial occurrences of Cyanobacteria, total and toxic microcystin-producing Microcystis in Tai and Yang-cheng lakes.

Table S1 Monthly averaged physical and chemical water quality parameters in Tai and Yang-cheng lakes from July to October, 2010.

Table S2 Averaged physical and chemical water quality parameters at different sampling sites in Tai and Yang-cheng lakes from July to October.

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