SEARCH

SEARCH BY CITATION

References

  • Behringer, M., Miller, W.G. and Oyarzabal, O.A. (2011) Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MLST, PFGE and REP-PCR. J Microbiol Methods 84, 194201.
  • Bolotin, A., Ouinquis, B., Sorokin, A. and Ehrlich, S.D. (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 25512561.
  • Colles, F.M., Jones, T.A., McCarthy, N.D., Sheppard, S.K., Cody, A.J., Dingle, K.E., Dawkins, M.S. and Maiden, M.C.J. (2008) Campylobacter infection of broiler chickens in a free-range environment. Environ Microbiol 10, 20422050.
  • Colles, F.M., McCarthy, N.D., Sheppard, S.K., Layton, R. and Maiden, M.C.J. (2010) Comparison of Campylobacter populations isolated from a free-range broiler flock before and after slaughter. Int J Food Microbiol 137, 259264.
  • Deveau, H., Garneau, J.E. and Moineau, S. (2010) CRISPR/Cas system and its role in phage-bacteria interactions. Annu Rev Microbiol 64, 475493.
  • Didelot, X. and Falush, D. (2007) Inference of bacterial microevolution using multilocus sequence data. Genetics 175, 12511266.
  • Dingle, K.E., Colles, F.M., Wareing, D.R.A., Ure, R., Fox, A.J., Bolton, F.E., Bootsma, H.J., Willems, R.J.L. et al. (2001) Multilocus sequence typing system for Campylobacter jejuni. J Clin Microbiol 39, 1423.
  • European Food Safety Authority (2011) Scientific opinion on Campylobacter in broiler meat production: control options and performance objectives and/or targets at different stages of the food chain. EFSA J 9, 2105.
  • Fabre, L., Zhang, J., Guigon, G., Le Hello, S., Guibert, V., Accou-Demartin, M., de Romans, S., Lim, C. et al. (2012) CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections. PLoS ONE 7, e36995.
  • Gelman, A. and Rubin, D.B. (1992) Inference from iterative simulation using multiple sequences. Stat Sci 7, 457472.
  • Griekspoor, P., Colles, F.M., McCarthy, N.D., Hansbro, P.M., Ashhurst-Smith, C., Olsen, B., Hasselquist, D., Maiden, M.C. et al. (2013) Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds. Mol Ecol 22, 14631472.
  • Grissa, I., Vergnaud, G. and Pourcel, C. (2007) CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 35, W52W57.
  • de Haan, C.P.A., Kivistö, R.I., Häkkinen, M., Corander, J. and Hänninen, M.-L. (2010a) Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections. BMC Microbiol 10, 200.
  • de Haan, C.P.A., Kivistö, R., Häkkinen, M., Rautelin, H. and Hänninen, M.-L. (2010b) Decreasing trend of overlapping multilocus sequence types between Human and chicken Campylobacter jejuni isolates over a decade in Finland. Appl Environ Microbiol 76, 52285236.
  • de Haan, C.P.A., Lampen, K., Corander, J. and Hänninen, M.-L. (2013) Multilocus sequence types of environmental Campylobacter jejuni isolates and their similarities to those of human, poultry and bovine C. jejuni isolates. Zoonoses Public Health 60, 125133.
  • Habib, I., Miller, W.G., Uyttendaele, M., Houf, K. and De Zutter, L. (2009) Clonal population structure and antimicrobial resistance of Campylobacter jejuni in chicken meat from Belgium. Appl Environ Microbiol 75, 42644272.
  • Heuer, O.E., Pedersen, K., Andersen, J.S. and Madsen, M. (2001) Prevalence and antimicrobial susceptibility of thermophilic Campylobacter in organic and conventional broiler flocks. Lett Appl Microbiol 33, 269274.
  • Huneau-Salaün, A., Denis, M., Balaine, L. and Salvat, G. (2007) Risk factors for Campylobacter spp. colonization in French free-range broiler-chicken flocks at the end of the indoor rearing period. Prev Vet Med 80, 3448.
  • Huson, D.H. and Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23, 254267.
  • Kärenlampi, R., Rautelin, H., Schönberg-Norio, D., Paulin, L. and Hänninen, M.-L. (2007a) Longitudinal study of Finnish Campylobacter jejuni and C. coli isolates from humans, using multilocus sequence typing, including comparison with epidemiological data and isolates from poultry and cattle. Appl Environ Microbiol 73, 148155.
  • Kärenlampi, R., Rautelin, H. and Hänninen, M.-L. (2007b) Evaluation of genetic markers and molecular typing methods for prediction of sources of Campylobacter jejuni and C. coli infections. Appl Environ Microbiol 73, 16831685.
  • Korczak, B.M., Zurfluh, M., Emler, S., Kuhn-Oertli, J. and Kuhnert, P. (2009) Multiplex strategy for multilocus sequence typing, fla typing, and genetic determination of antimicrobial resistance of Campylobacter jejuni and Campylobacter coli isolates collected in Switzerland. J Clin Microbiol 47, 19962007.
  • Louwen, R., Horst-Kreft, D., de Boer, A.G., van der Graaf, L., de Knegt, G., Hamersma, M., Heikema, A.P., Timms, A.R. et al. (2013) A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain-Barré, syndrome. Eur J Clin Microbiol Infect Dis 32, 207226.
  • McCarthy, N.D., Colles, F.M., Dingle, K.E., Bagnall, M.C., Manning, G., Maiden, M.C.J. and Falush, D. (2007) Host-associated genetic import in Campylobacter jejuni. Emerg Infect Dis 13, 267272.
  • McCrea, B.A., Tonooka, K.H., VanWorth, C., Boggs, C.L., Atwill, R. and Schrader, J.S. (2006) Prevalence of Campylobacter and Salmonella species on farm, after transport, and at processing in specialty market poultry. Poult Sci 85, 136143.
  • Miller, W.G., On, S.L.W., Wang, G.L., Fontanoz, S., Lastovica, A.J. and Mandrell, R.E. (2005) Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus. J Clin Microbiol 43, 23152329.
  • Newell, D.G. and Fearnley, C. (2003) Sources of Campylobacter colonization in broiler chickens. Appl Environ Microbiol 69, 43434351.
  • Oyarzabal, O.A., Backert, S., Williams, L.L., Lastovica, A.J., Miller, R.S., Pierce, S.J., Vieira, S.L. and Rebollo-Carrato, F. (2008) Molecular typing, serotyping and cytotoxicity testing of Campylobacter jejuni strains isolated from commercial broilers in Puerto Rico. J Appl Microbiol 105, 800812.
  • Perez-Boto, D., Garcia-Peña, F.J., Abad-Moreno, J.C. and Echeita, M.A. (2012) Dynamics of populations of Campylobacter jejuni in two grandparent broiler breeder farms: persistent vs. transient strains. Vet Microbiol 159, 204211.
  • Price, E.P., Smith, H., Huygens, F. and Giffard, P.M. (2007) High-resolution DNA melt curve analysis of the clustered, regularly interspaced short-palindromic-repeat locus of Campylobacter jejuni. Appl Environ Microbiol 73, 34313436.
  • Sails, A.D., Swaminathan, B. and Fields, P.I. (2003) Clonal complexes of Campylobacter jejuni identified by multilocus sequence typing correlate with strain associations identified by multilocus enzyme electrophoresis. J Clin Microbiol 41, 40584067.
  • Schouls, L.M., Reulen, S., Duim, B., Wagenaar, J.A., Willems, R.J.L., Dingle, K.E., Colles, F.M. and Van Embden, J.D.A. (2003) Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. J Clin Microbiol 41, 1526.
  • Sheppard, S.K., Dallas, J.F., MacRae, M., McCarthy, N.D., Sproston, E.L., Gormley, F.J., Strachan, N.J.C., Ogden, I.D. et al. (2009) Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6. Int J Food Microbiol 134, 96103.
  • Simpson, E.H. (1949) Measurement of diversity. Nature 163, 688.
  • Sulonen, J., Kärenlampi, R., Holma, U. and Hänninen, M.-L. (2007) Campylobacter in Finnish organic laying hens in autumn 2003 and spring 2004. Poult Sci 86, 12231228.