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Figure S1 Graphical representation of the proportion of membership of each of the analysed llama populations for K = 5 as obtained with the structure software.

Table S1 (a) Description of the type of samples used in this work for the 24 different localities sampled. These localities were grouped in the 12 llama groups indicated according the geographical proximity criteria. (b) Description of the geographical distance between pairs of groups used in this work for the 24 different localities sampled. These localities were grouped in the 12 llama groups indicated according the geographical proximity criteria.

Table S2 Four multiloading panels were used for genotyping of the 42 microsatellites analysed in this study.

Table S3 Genetic diversity parameters estimated for the 42 microsatellite markers analyzed across the 12 llama groups considered in this study.

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