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Appendix S1 Collection localities and GenBank accession numbers.

Appendix S2 Supplementary methods: details of phylogenetic analyses.

Appendix S3 Supplementary figures. awty output for Bayesian inference analyses implemented in MrBayes (Figs S1 & S2). Phylogeny of Pomacanthus (Fig. S3). awty output for Bayesian inference analyses implemented in beast (Figs S4 & S5).

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