jvim12015-sup-0001-TableS1.docxWord document13KTable S1. SNP markers from the Illumina Equine SNP50 platform that passed quality control settings (minor allele frequency > 0.01 and genotyping across individuals >90%) surrounding TTPA were chosen to cover 1.5 Mb 5′ of the gene and 1.5 Mb 3′ of the gene and results of association analysis of all 79 SNPs (71 from Illumina Equine SNP50 platform and 12 from SNP discovery on direct sequencing) with χ2 and permuted P values after 100 permutations.
jvim12015-sup-0002-TableS2.docxWord document44KTable S2. Forward, reverse, and extension primers used for multiplex genotyping of the SNPs discovered during sequencing of TTPA.

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