Vincent Bourret and Matthew P. Kent equally share first co-authorship.Louis Bernatchez and Sigbjørn Lien equally share senior co-authorship.
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)
Article first published online: 12 SEP 2012
© 2012 Blackwell Publishing Ltd
Special Issue: Evolutionary Ecological Genomics
Volume 22, Issue 3, pages 532–551, February 2013
How to Cite
Bourret, V., Kent, M. P., Primmer, C. R., Vasemägi, A., Karlsson, S., Hindar, K., McGinnity, P., Verspoor, E., Bernatchez, L. and Lien, S. (2013), SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar). Molecular Ecology, 22: 532–551. doi: 10.1111/mec.12003
Louis Bernatchez and Sigbjørn Lien equally share senior co-authorship.
- Issue published online: 15 JAN 2013
- Article first published online: 12 SEP 2012
- Manuscript Accepted: 7 JUN 2012
- Manuscript Revised: 17 MAY 2012
- Manuscript Received: 27 FEB 2012
- Natural Sciences and Engineering Research Council of Canada (NSERC)
- Canadian Research Chair in genomics and conservation of aquatic resources
- Academy of Finland
- Estonian Science Foundation
- Irish Government under the Sea Change Programme to PMcG
- functional genomics programme (FUGE) in the Research Council of Norway
|mec12003-sup-0001-TablesS1-S7.xlsx||application/msexcel||5277K||Table S1 Observed heterozygosity (HO) among GCR and EST based SNPs in both continents. Table S2 Single nucleotide polymorphism (SNPs) markers observed (HO) and expected (HE) heterozygosities per population. Table S3 Pairwise measures of genetic differentiation (FST). Table S4 Summary of the detection of markers potentially under selection following Fdist (North America) and hierarchical Fdist (Intercontinental, Europe, Russian Landlocked and Norwegian landlocked) genome scans implemented in arlequin 3.5 (Excoffier & Lischer 2010). Table S5 Summary of the detection of genomic regions showing elevated or decreased divergence in European (measured as FCT) salmon populations. Table S6 Blast results from BLAST2GO with blast e-value treshold of 1 × 10−3 and gene ontology (GO) terms annotation for blast of e-value inferior to 1 × 10−10. Table S7 Likelihood of models tested to best explain the geographical positions of clines in (a) the Baltic continuum and (b) the Barents continuum.|
|mec12003-sup-0002-FigureS1-S29.pdf||application/PDF||1554K||Fig. S1–S29 The distribution of European FCT along the linkage groups [number of Figure corresponds to linkage group number (e.g. Figure S1 corresponds to linkage group SSA01)].|
|mec12003-sup-0003-AppendixS1.docx||Word document||116K||Appendix S1 Supplementary methods.|
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