Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex
Article first published online: 12 OCT 2012
© 2012 Blackwell Publishing Ltd
Volume 22, Issue 1, pages 111–129, January 2013
How to Cite
O'Neill, E. M., Schwartz, R., Bullock, C. T., Williams, J. S., Shaffer, H. B., Aguilar-Miguel, X., Parra-Olea, G. and Weisrock, D. W. (2013), Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex. Molecular Ecology, 22: 111–129. doi: 10.1111/mec.12049
- Issue published online: 18 DEC 2012
- Article first published online: 12 OCT 2012
- Manuscript Accepted: 21 AUG 2012
- Manuscript Revised: 10 AUG 2012
- Manuscript Received: 21 MAY 2012
- Commonwealth of Kentucky
- National Science Foundation. Grant Number: DEB-0949532
|mec12049-sup-0001-FigS1.pdf||Word document||6573K||Fig. S1 Species trees.|
|mec12049-sup-0002-FigS2.pdf||application/PDF||58K||Fig. S2 Flowchart showing the steps involved in identifying SNPs (heterozygous positions) within each primary alignment.|
Fig. S3 The frequency of the number of imperfect linkages (SNPs that could be linked in more than one way) within inferred genotypes (individual-locus combinations).
Fig. S4 Enlargement of S3 showing the bottom portion of the histogram more clearly.
Fig. S5 The frequencies of the proportions of imperfect linkages (SNPs that could be linked in more than one way) within inferred genotypes (individual-locus combination).
|mec12049-sup-0004-TableS1.doc||Word document||157K||Table S1 Locality and sampling information for all individuals used in this study.|
|mec12049-sup-0005-TableS2.docx||Word document||134K||Table S2 Information for loci used in this study.|
|mec12049-sup-0006-TableS3.xls||application/msexcel||36K||Table S3 Structure statistics resulting from analysis of the full data set.|
|mec12049-sup-0007-TableS4.docx||Word document||51K||Table S4 Approximate costs of this study compared with Sanger sequencing.|
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