Beyond an AFLP genome scan towards the identification of immune genes involved in plague resistance in Rattus rattus from Madagascar
Article first published online: 12 DEC 2012
© 2012 Blackwell Publishing Ltd
Volume 22, Issue 2, pages 354–367, January 2013
How to Cite
Tollenaere, C., Jacquet, S., Ivanova, S., Loiseau, A., Duplantier, J.-M., Streiff, R. and Brouat, C. (2013), Beyond an AFLP genome scan towards the identification of immune genes involved in plague resistance in Rattus rattus from Madagascar. Molecular Ecology, 22: 354–367. doi: 10.1111/mec.12115
- Issue published online: 3 JAN 2013
- Article first published online: 12 DEC 2012
- Manuscript Accepted: 2 OCT 2012
- Manuscript Revised: 20 SEP 2012
- Manuscript Received: 12 JUN 2012
Appendix S1 Details on the primers and samples used for the sequencing of each AFLP outlier marker.
Appendix S2 Summary of the data obtained for empirical AFLP analysis in Rattus rattus and for in silico AFLP analysis in Rattus norvegicus.
Appendix S3 Results of the in silico AFLP analysis of the Rattus norvegicus genome
Appendix S4 Fasta file containing the sequences obtained for the 17 AFLP loci detected as potentially undergoing plague-mediated selection according to Tollenaere et al. (2011).
Appendix S5 Table containing the repeated elements found in the sequences (detailed results of Repeatmasker software).
Appendix S6 Exhaustive list of the genes found in the neighborhood (considering a window of 600 kb around each marker) of the 14 outlier loci assigned to a specific genomic region.
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