Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees
Article first published online: 3 DEC 2012
© 2012 Blackwell Publishing Ltd
Volume 22, Issue 2, pages 397–408, January 2013
How to Cite
Pravosudov, V. V., Roth, T. C., Forister, M. L., LaDage, L. D., Kramer, R., Schilkey, F. and van der Linden, A. M. (2013), Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees. Molecular Ecology, 22: 397–408. doi: 10.1111/mec.12146
- Issue published online: 3 JAN 2013
- Article first published online: 3 DEC 2012
- Manuscript Accepted: 24 OCT 2012
- Manuscript Revised: 18 OCT 2012
- Manuscript Received: 5 JUL 2012
Fig. S1 Chickadee hippocampus.
Fig. S2 Hippocampal transcriptome profile of genes previously associated with learning and memory processes.
Fig. S3 Overview assembly pipeline of pooled and individual assemblies.
Fig. S4 Summary results of de novo transcriptome assembly.
Table S1 Black-capped chickadee (Poecile atricapillus) samples from Alaska (AK) and Kansas (KS) used in this study.
Table S2 Summary of sequencing results for each hippocampus tissue sample of black-capped chickadees from Alaska (AK) and Kansas (KS).
Table S3 Summary of de-novo assembly and similarity search results of the hippocampus transcriptome of the black-capped chickadee.
Table S4 GO-term IDs used in this study for functional annotation.
Table S7 Significant differentially expressed genes between Alaska and Kansas chickadees.
|mec12146-sup-0002-TableS5.xlsx||application/msexcel||4529K||Table S5 List of 23 295 assembled candidate transcripts expressed in the hippocampus of Alaska and Kansas chickadees (Excel spreadsheet).|
|mec12146-sup-0003-TableS6.xlsx||application/msexcel||3417K||Table S6 List of 13 982 protein-coding sequences derived from candidate transcripts with high similarity to other species (Excel spreadsheet).|
|mec12146-sup-0004-TableS8.xlsx||application/msexcel||308K||Table S8 List of 484 significant differentially expressed transcripts in the hippocampus between Alaska and Kansas chickadees with GO-term functional annotations (Excel spreadsheet).|