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mec12165-sup-0001-FigS1-S15.pdfapplication/PDF4154K

Fig. S1 Schematic representation of the demographic model motivated by the reintroduction of Alpine ibex into the Swiss Alps.

Fig. S2 Information contained in summary statistics on strength and direction of gene flow.

Fig. S3 Values of inline image that belong to data points accepted when inferring with ABC in Aeschbacher et al. (2012), plotted against correcponding values of inline image.

Fig. S4 Relation between the rate of migration from deme 5 to deme 18, inline image, and the candidate summary statistics described in Table 1.

Fig. S5 Relation between the rate of migration from deme 18 to deme 5, inline image, and the candidate summary statistics described in Table 1.

Fig. S6 Relation between the rate of migration from deme 5 to deme 22, inline image, and the candidate summary statistics described in Table 1.

Fig. S7 Relation between the rate of migration from deme 22 to deme 5, inline image, and the candidate summary statistics described in Table 1.

Fig. S8 Standardized accuracy of different methods for choosing summary statistics as a function of the acceptance rate (ε) for deme cluster 3.

Fig. S9 Ratio of posterior point estimate (median) to true value for the joint and pairwise estimation method for deme cluster 2.

Fig. S10 Ratio of posterior point estimate (median) to true value for the joint and pairwise estimation method for cluster 5.

Fig. S11 Correlation of posterior point estimate and true value for the joint and pairwise estimation method across 500 test data sets.

Fig. S12 Correlation of posterior point estimate and true value for the joint and pairwise estimation for cluster 5.

Fig. S13 Probability density fitted to the empirical distribution of relative probabilities of the mig and the nomig model when they are the true model.

Fig. S14 Probability density fitted to the empirical distribution of relative probabilities of the mig model when the mig model and the nomig model are the true models.

Fig. S15 Posterior distributions of migration rates for deme cluster 3 obtained in eight independent test runs with true values drawn from the prior.

mec12165-sup-0002-AppendixS1-S3.pdfapplication/PDF406K

Appendix S1 Model and parameters.

Appendix S2 Additional Methods.

Appendix S3 Additional Results.

mec12165-sup-0003-TableS1-S9.pdfapplication/PDF245K

Table S1 Deme names, deme numbers and sampling sizes in the Alpine ibex data set.

Table S2 Validation of approximate sufficiency under the joint inference approach.

Table S3 Validation of approximate sufficiency under the pairwise inference approach.

Table S4 Accuracy of different methods for choosing summary statistics on a global scale.

Table S5 Accuracy of different methods for choosing summary statistics on a local scale.

Table S6 Accuracy of different methods for choosing summary statistics, relative to ABC with all candidate summary statistics.

Table S7 Accuracy of pairwise estimation of migration rate compared to fully joint estimation for deme cluster 3.

Table S8 Accuracy of pairwise estimation of migration rate compared to fully joint estimation for deme cluster 2.

Table S9 Accuracy of pairwise estimation of migration rate compared to fully joint estimation for deme cluster 5.

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