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Dataset S1 X/Y coordinates of presences of Malus sylvestris in Europe used for ENM.

Text S1 ENM methodology used to project paleodistribution of Malus sylvestris.

Fig. S1 Sampling of the different Malus sylvestris sites through Europe.

Fig. S2 Bayesian clustering results of Malus sylvestris in Europe (= 381) using the program structure from = 2 to = 6.

Fig. S3 Maps of mean membership probabilities per site from the structure analysis for Malus sylvestris assuming 2 to 5 clusters.

Fig. S4 Estimated number of populations in Malus sylvestris from TESS analyses using the DIC.

Fig. S5 Estimated number of populations in Malus sylvestris from structure analyses using the ∆K.

Fig. S6 PCA on 3,000 simulations for Malus sylvestris.

Fig. S7 Marginal posterior distributions of demographic and historical parameters estimated by Simcoal2.

Fig. S8 Ensemble forecast using Malus sylvestris presence records and pseudo-absences projected onto the map of Europe and Western Russia using 19 bioclimatic variables.

Table S1 Description of the Malus sylvestris accessions analysed with their geographical origins and providers, and acknowledgement.

Table S2 Prior distributions used in approximate Bayesian computations.

Table S3 Summary statistics for each Malus sylvestris sampling site with at least four individuals.

Table S4 Summary statistics for the 26 microsatellite loci in Malus sylvestris.

Table S5 Pairwise genetic differentiation (FST) among the 25 sites.

Table S6 AUC Index for ENM ran with eight and 19 bioclimatic variables for each of the six models and each repetition.

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