Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in South-East Asia
Version of Record online: 21 FEB 2013
© 2013 Blackwell Publishing Ltd
Volume 22, Issue 8, pages 2264–2279, April 2013
How to Cite
Ohtani, M., Kondo, T., Tani, N., Ueno, S., Lee, L. S., Ng, K. K. S., Muhammad, N., Finkeldey, R., Na'iem, M., Indrioko, S., Kamiya, K., Harada, K., Diway, B., Khoo, E., Kawamura, K. and Tsumura, Y. (2013), Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in South-East Asia. Molecular Ecology, 22: 2264–2279. doi: 10.1111/mec.12243
- Issue online: 3 APR 2013
- Version of Record online: 21 FEB 2013
- Manuscript Accepted: 5 JAN 2013
- Manuscript Revised: 26 DEC 2012
- Manuscript Received: 2 OCT 2012
- Grant-in-Aids for Scientific Research. Grant Numbers: 18255010, 24405034
- Ministry of Education, Culture, Sports, Science and Technology of Japan
- Global Environment Research Program
- Ministry of Environment of Japan. Grant Number: E-091
Table S1 Characteristics of the primers for 16 noncoding regions of chloroplast DNA, with the results of polymorphism screening in 12 individuals of Shorea leprosula.
Table S2 DNA Data Bank of Japan (DDBJ) accession numbers for the sequences of four noncoding regions of chloroplast DNA obtained in this study.
Table S3 Results of FST outlier analysis for the 27 EST-SSR loci developed for Shorea leprosula performed using lositan software.
Table S4 Variable sites of the 28 Shorea leprosula chloroplast haplotypes, excluding SSRs.
Table S5 Summary of polymorphisms observed in the four noncoding chloroplast DNA regions.
Fig. S1 Relationships between the number of clusters (K) and the two statistics used to determine optimum K values: estimated log-likelihood (ln Pr(X|K), indicated by open circles; and ΔK (Evanno et al. 2005), indicated by filled circles.
Fig. S2 Estimated phylogenies of the 22 chloroplast haplotypes of Shorea leprosula according to Bayesian and maximum likelihood criteria.
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