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mec12278-sup-0001-Supplementary Material1.xlsxapplication/msexcel60KAppendix S1 Exact tests for deviations from Hardy–Weinberg equilibrium at each locus in each population.
mec12278-sup-0002-Supplementary Material2.xlsxapplication/msexcel61KAppendix S2 Estimates of null allele frequencies (for locus in each population, averaged across populations, averaged across loci) according to the expectation maximization (EM) algorithm of FreeNA (Chapuis & Estoup 2007).
mec12278-sup-0003-Supplementary Material3.docWord document28KAppendix S3 Probability values of one-tailed Wilcoxon signed-rank tests to verify significant heterozygosity (H) deficit or excess as expected after recent expansion or reduction in population sizes.
mec12278-sup-0004-Supplementary Material4.docWord document106KAppendix S4 Interpopulation pairwise FST values (above the diagonal) and FDR adjusted significance levels (below the diagonal).
mec12278-sup-0005-Supplementary Material5.EPSimage/eps743KAppendix S5 Average likelihood of runs in structure and optimal number of clusters (K) according to Evanno et al. (2005).
mec12278-sup-0006-Supplementary Material6.xlsxapplication/msexcel214KAppendix S6 structure individual assignments of 621 specimens of C. rosa (RO), C. fasciventris (FA) and C. anonae (AN) according to the method described by Coulon et al. (2008) or, more simply, considering four to seven structure clusters (K = 4–7).
mec12278-sup-0007-Supplementary Material7.docWord document46KAppendix S7 Pairwise FST and Cavalli-Sforza & Edwards' (1967) genetic distances (above the diagonal) and FDR adjusted significance levels (below the diagonal) among five structure clusters (F1, F2, R1, R2, A, see Fig. 3).
mec12278-sup-0008-Supplementary Material8.epsimage/eps4131KAppendix S8 Principal component analysis (PCA) based on Euclidean distances among individual genotypes.
mec12278-sup-0011-AppendixS8.epsimage/eps4131K 
mec12278-sup-0009-Supplementary Material9.docWord document28KAppendix S9 Analysis of molecular variance (amova).
mec12278-sup-00010-Supplementary Material10.epsimage/eps6531KAppendix S10 Comparisons between the admixture proportions of 621 specimens of C. rosa, C. fasciventris and C. anonae (K = 4–7) considering or not missing data as recessive homozygotes for the null alleles.

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