Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes
Version of Record online: 8 MAY 2013
© 2013 Blackwell Publishing Ltd
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Volume 22, Issue 18, pages 4767–4782, September 2013
How to Cite
Kobayashi, M. J., Takeuchi, Y., Kenta, T., Kume, T., Diway, B. and Shimizu, K. K. (2013), Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes. Molecular Ecology, 22: 4767–4782. doi: 10.1111/mec.12344
- Issue online: 6 SEP 2013
- Version of Record online: 8 MAY 2013
- Manuscript Accepted: 5 APR 2013
- Manuscript Revised: 2 APR 2013
- Manuscript Received: 10 JUL 2012
|mec12344-sup-0001-FigS1.pdf||application/PDF||1129K||Fig. S1 Shorea beccariana during general flowering.|
|mec12344-sup-0002-FigS2.pdf||application/PDF||242K||Fig. S2 Schematic representation of the 2*2 tables for the Fisher's exact tests.|
|mec12344-sup-0003-FigS3.pdf||application/PDF||42K||Fig. S3 Neighbor-joining trees of flowering-related genes in Shorea beccariana.|
|mec12344-sup-0004-FigS4a.pdf||application/PDF||1878K||Fig. S4 Box plots of the expression patterns of (A) seven and (B) eight clusters of the differentially expressed unigenes based on the PAM algorithm.|
|mec12344-sup-0006-FigS5.pdf||application/PDF||26K||Fig. S5 Position and sequence of the conserved miRNA target site within the SPL gene family.|
Table S1 Primer and adaptor sequences used in this study.
Table S2 Read count data of unigenes (contigs) before normalization.
Table S3. Summary of differentially expressed unigenes.
Table S4 Homologs of flowering-related genes.
Table S5 Flowering time of A. thaliana transgenic plants that overexpress S. beccariana flowering genes.
Table S6 Results of the Fisher's exact test (7 clusters by PAM).
Table S7 Results of the Fisher's exact test (46 groups of expression patterns based on AIC).
Table S8 GO term enrichment in six clusters based on the PAM algorithm.
Table S9 Ten years of drought data.
Table S10 Details of the 33 A. thaliana gene sets used in this study.
|mec12344-sup-0008-tables2_11.xls||application/msexcel||1638K||Table S11 Summary of the genes used in phylogenetic analyses.|
Appendix S1 Details of the 33 gene sets of Arabidopsis thaliana.
Appendix S2 Number of clusters by PAM clustering.
Appendix S3 RNA extraction.
Appendix S4 Transformation experiments.
Appendix S5 Quantitative real-time polymerase chain reaction (qRT-PCR) analysis.
Appendix S6 Phylogenetic analyses of flowering genes.
Appendix S7 Meteorological data collection.
Appendix S8 Estimation of water deficit.
Appendix S9 Examination of expression profiles of gene groups with a different clustering method based on the Akaike information criterion (AIC).
Appendix S10 Gene Ontology (GO) term enrichment analysis.
Appendix S11 Conservation and divergence of the regulatory network for flowering genes in S. beccariana.
Appendix S12 Flowering and physiological states of the trees.
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