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Appendix S1 Program R code and a description of how to use it for real data.

Appendix S2 Maps of landscapes for scenario I.

Appendix S3 Linearity assumption and results of linearity plots of ecological distance and genetic distance.

Appendix S4 Summary of results for resistance estimates at generation 100.

Appendix S5 Mantel r surface for a 2 categorical variable in scenario I, with 1600 individuals.

Appendix S6 Mantel r surface for one simulation where estimates did not converge and varied widely. The simulation had 900 individuals and was one of the simulations from scenario B, where results are depicted in Fig. 5.

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