Multilocus phylogeography of the European ground squirrel: cryptic interglacial refugia of continental climate in Europe
Article first published online: 23 JUL 2013
© 2013 John Wiley & Sons Ltd
Volume 22, Issue 16, pages 4256–4269, August 2013
How to Cite
Říčanová, Š., Koshev, Y., Říčan, O., Ćosić, N., Ćirović, D., Sedláček, F. and Bryja, J. (2013), Multilocus phylogeography of the European ground squirrel: cryptic interglacial refugia of continental climate in Europe. Molecular Ecology, 22: 4256–4269. doi: 10.1111/mec.12382
- Issue published online: 9 AUG 2013
- Article first published online: 23 JUL 2013
- Manuscript Accepted: 9 MAY 2013
- Manuscript Revised: 7 MAY 2013
- Manuscript Received: 17 JAN 2013
- South Bohemia University. Grant Number: 36/2007/P-PřF
- Academy of Science, Czech Republic. Grant Number: KJB601410816
Fig. S1 (A) Estimated L probabilities of data for different K. (B) Values of ▵ K according to Evanno et al. (2005). Higher the values are, the better model of the certain K is.
Fig. S2. Distribution of sampled localities for microsatellite data (for details on localities see Table S1). Pie charts represent the proportion of each population assigned to particular cluster according to Structure analysis (K=7).
|mec12382-sup-0003-TableS1.doc||Word document||237K||Table S1 Details on geographical origin of sampled European ground squirrel specimens; with locality codes (numbers) corresponding with numbers used in Fig. 1, name of locality, GPS coordinates; for mtDNA data: exact sample number, N number of individuals per population, recorded haplotype, belonging to certain clade, GenBank accession number and origin of the sequence (citation); for microsatellite data: N sampled number per population, AR allelic richness, He heterozygosity in population, FIS index of inbreeding used here as a alternative detection of deviation from HWE (significant values are marked by * where P < 0.05).|
|mec12382-sup-0004-TableS2.doc||Word document||35K||Table S2 Diversity estimates for main clades recovered in phylogenetic analyses of mtDNA in the EGS. Diversity values were calculated in DnaSP software and are described as number of sequences (N), number of variable sites (Ns), number of haplotypes (Nh), haplotype diversity (Hd), nucleotide diversity (Pi) and average number of nucleotide differences (k). The results of following neutrality tests are also presented: Fu & Li's F*, Fu & Li's D*, Fu's Fs, Tajima's D and expansion coefficient (exp). Values for clades IV and V are not shown, since each is represented by only one sequence. *significant values at P<0.05, ** significant values at P <0.02.|
|mec12382-sup-0005-TableS3.doc||Word document||120K||Table S3 Estimation of the presence of null alleles in each population and for each microsatellite locus using FreeNA software (Chapuis and Estoup 2007). Only values higher than 0.15 are marked in grey, which are considered to represent a high probability of the presence of a null allele.|
|mec12382-sup-0006-TableS4.doc||Word document||427K||Table S4 Genetic differentiation among populations using FST values. Values of FSTENA are above diagonal and values of F'ST (standardised values according to Hedrick 2005) are below diagonal. Numbers are used for population identification corresponding with the numbers in Table S1. Note: NS- not significant values are indicated in grey, other values (not marked) are significant (P<0.0.5).|
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