Monophyly of Wolbachia pipientis genomes within Drosophila melanogaster: geographic structuring, titre variation and host effects across five populations
Version of Record online: 14 OCT 2013
© 2013 John Wiley & Sons Ltd
Volume 22, Issue 23, pages 5765–5778, December 2013
How to Cite
Early, A. M. and Clark, A. G. (2013), Monophyly of Wolbachia pipientis genomes within Drosophila melanogaster: geographic structuring, titre variation and host effects across five populations. Molecular Ecology, 22: 5765–5778. doi: 10.1111/mec.12530
- Issue online: 25 NOV 2013
- Version of Record online: 14 OCT 2013
- Accepted manuscript online: 20 SEP 2013 09:22AM EST
- Manuscript Accepted: 31 AUG 2013
- Manuscript Received: 5 APR 2013
- NIH. Grant Number: R01 AI064950
Fig. S1 Neighbor-Net phylogenetic networks of mtDNA and Wolbachia haplotypes
Fig. S2 Maximum Likelihood tree of D. melanogaster mitochondria sequences. Included are the 91 lines from this paper, 20 additional sequences available on GenBank and a new assembly of short read sequences from a Canton-S line.
Fig. S3 Maximum Likelihood tree of mitochondrial COI sequences from this paper and Nunes et al. (2008b).
Fig. S4 Mitochondrial haplotype network
Fig. S5 Mitochondrial phylogenetic tree constructed with BEAST
Table S1 Summary of reads mapped to the wMel and mtDNA references for each line.
Table S2 Summary of identified wMel SNPs.
Table S3 Summary of identified indels in wMel.
Table S4 Summary of identified mtDNA SNPs. SNP positions are given relative to the D. melanogaster mitochondrial reference sequence (NC_001709).
Table S5 Summary of identified indels in mtDNA.
|mec12530-sup-0003-AppendixS1.txt||plain text document||2K||Appendix S1 Perl script used for nucleotide diversity (π) calculations.|
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