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Table S1 GenBank accession nos and references of organisms and proteins presented in main text and figures.

Table S2 Treponema primitia str. ZAS-1 and ZAS-2 meta-cleavage pathway genes and Pfam features.

Table S3 Gene expression patterns of Treponema primitia str. ZAS-2 in pure culture or coculture with T. azotonutricium str. ZAS-9.

Table S4 Expression of Treponema primitia str. ZAS-2 genes.

Fig. S1 Pfam domains and conserved functional residues and sequence motifs in Treponema primitia str. ZAS-1 and ZAS-2 meta-cleavage pathway proteins.

Fig. S2 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 2-hydroxymuconic semialdehyde hydrolase (PF00561, step 2).

Fig. S3 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 2-oxopent 4-enoate hydratase (PF01557, step 3).

Fig. S4 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 ferredoxin-like peptide (PF00111, Step 1′).

Fig. S5 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 4-hydroxy-2-oxopentanoate aldolase (PF00682 and PF07836, Step 4).

Fig. S6 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 acetaldehyde dehydrogenase (PF01118 and PF09290, Step 5).

Fig. S7 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 N-terminal Domain (PF00903).

Fig. S8 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 N-terminal Domain (PF00903) with extra-domain region.

Fig. S9 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 N-terminal Domain (PF00903) with intradomain region.

Fig. S10 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 C-terminal Domain (PF00903).

Fig. S11 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 C-terminal Domain (PF00903) with extra-domain region.

Fig. S12 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 C-terminal Domain (PF00903) with intradomain region.

Fig. S13 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 4-hydroxy-2-oxopentanoate aldolase HMGL-like domain (PF00682).

Fig. S14 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 4-hydroxy-2-oxopentanoate aldolase DmpG-like communication domain (PF07836).

Fig. S15 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 acetaldehyde dehydrogenase, NAD binding domain (PF01118).

Fig. S16 Phylogenetic position of Treponema primitia str. ZAS-1 and ZAS-2 acetaldehyde dehydrogenase dimerization domain (PF09290).

Fig. S17 Transcriptional regulatory elements within the Treponema primitia str. ZAS-1 and ZAS-2 meta-cleavage pathway gene neighbourhoods.

Fig. S18 Microoxic growth of Treponema primitia str. ZAS-1.

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