Fig. S1 Heat map showing quantile (each representing 5% of the FST distribution) ranks for all three comparisons.

Fig. S2 Relationship between the number of observed versus expected shared markers and FST.

Fig. S3 Correlation coefficients for each of the three species pairs of FST against recombination rate calculated for H annuus.

Fig. S4 Correlation coefficient per species pairs of the rate of synonymous mutations per synonymous site [log(ds)] against FST.

Fig. S5 Correlation coefficient among species pairs for the rate of synonymous mutation per synonymous site [log(ds)].

Table S1 Summary statistics (M : million).

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