mec12693-sup-0001-FigS1.pdfapplication/PDF7KFig. S1 Observed depth per site attained in the different experimental designs, before and after base and mapping quality filtering.
mec12693-sup-0002-FigS2.pdfapplication/PDF8KFig. S2 Genotyping sensitivity obtained with samtools, gatk and GHcall approach under the different experimental designs investigated.
mec12693-sup-0003-FigS3.pdfapplication/PDF22KFig. S3 Distribution of genetic variability estimates (Theta, Pi) obtained across replicates for the ‘no divergence’ and the 1% divergence scenarios.
mec12693-sup-0004-FigS4.pdfapplication/PDF32KFig. S4 Distribution of neutrality tests (Tajima's D, Fu and Li's D, Fay and Wu's H) obtained across replicates for the ‘no divergence’ and the 1% divergence scenarios.
mec12693-sup-0005-FigS5.pdfapplication/PDF262KFig. S5 Estimates of variability and SFS tests obtained in 100 kb windows across the first 20 Mb of chromosome 12, for all experimental designs and methods considered, and when using either the gorilla or the human genome as reference.
mec12693-sup-0006-TabS1.pdfapplication/PDF27KTable S1 Pearson's correlation coefficient calculated between pre- and post-sequencing data sets for all statistics and scenarios considered.
mec12693-sup-0007-FileS1.docWord document41KAppendix S1 Bioinformatics pipelines used in this study.

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