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Molecular Ecology

Cover image for Vol. 19 Issue s1

Special Issue: Next Generation Molecular Ecology

March 2010

Volume 19, Issue Supplement s1

Pages 1–284

  1. NEXT GENERATION MOLECULAR ECOLOGY Publication of this Supplemental Issue was made possible through the generosity of Roche and Applied Biosystems

    1. Top of page
    2. NEXT GENERATION MOLECULAR ECOLOGY Publication of this Supplemental Issue was made possible through the generosity of Roche and Applied Biosystems
    3. ORIGINAL ARTICLES
    1. EDITORIAL

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      Next Generation Molecular Ecology (pages 1–3)

      DIETHARD TAUTZ, HANS ELLEGREN and DETLEF WEIGEL

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04489.x

  2. ORIGINAL ARTICLES

    1. Top of page
    2. NEXT GENERATION MOLECULAR ECOLOGY Publication of this Supplemental Issue was made possible through the generosity of Roche and Applied Biosystems
    3. ORIGINAL ARTICLES
    1. You have free access to this content
      Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises (pages 4–20)

      S. CREER, V. G. FONSECA, D. L. PORAZINSKA, R. M. GIBLIN-DAVIS, W. SUNG, D. M. POWER, M. PACKER, G. R. CARVALHO, M. L. BLAXTER, P. J. D. LAMBSHEAD and W. K. THOMAS

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04473.x

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      Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water (pages 21–31)

      THORSTEN STOECK, DAVID BASS, MARKUS NEBEL, RICHARD CHRISTEN, MEREDITH D. M. JONES, HANS-WERNER BREINER and THOMAS A. RICHARDS

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04480.x

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      Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms (pages 32–40)

      RALPH MEDINGER, VIOLA NOLTE, RAM VINAY PANDEY, STEFFEN JOST, BIRGIT OTTENWÄLDER, CHRISTIAN SCHLÖTTERER and JENS BOENIGK

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04478.x

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      Bacterial diversity in a glacier foreland of the high Arctic (pages 54–66)

      URSEL M.E. SCHÜTTE, ZAID ABDO, JAMES FOSTER, JACQUES RAVEL, JOHN BUNGE, BJØRN SOLHEIM and LARRY J. FORNEY

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04479.x

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      Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination (pages 67–80)

      JOSEPH D. COOLON, KENNETH L. JONES, SANJEEV NARAYANAN and SAMANTHA M. WISELY

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04485.x

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      Ecogenomics: using massively parallel pyrosequencing to understand virus ecology (pages 81–88)

      MARILYN J. ROOSSINCK, PRASENJIT SAHA, GRAHAM B. WILEY, JIAXI QUAN, JAMES D. WHITE, HONGSHING LAI, FELIPE CHAVARRÍA, GUOAN SHEN and BRUCE A. ROE

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04470.x

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      Genome-wide SNP detection in the great tit Parus major using high throughput sequencing (pages 89–99)

      NIKKIE E. M. VAN BERS, KEES VAN OERS, HINDRIK H. D. KERSTENS, BERT W. DIBBITS, RICHARD P. M. A. CROOIJMANS, MARCEL E. VISSER and MARTIEN A. M. GROENEN

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04486.x

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      Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines (pages 100–114)

      J. B. WHITTALL, J. SYRING, M. PARKS, J. BUENROSTRO, C. DICK, A. LISTON and R. CRONN

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04474.x

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      Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping (pages 132–146)

      RICHARD J. A. BUGGS, SRIKAR CHAMALA, WEI WU, LU GAO, GREGORY D. MAY, PATRICK S. SCHNABLE, DOUGLAS E. SOLTIS, PAMELA S. SOLTIS and W. BRAD BARBAZUK

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04469.x

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      Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack (pages 147–161)

      CHARLES H. CANNON, CHAI-SHIAN KUA, D. ZHANG and J.R. HARTING

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04484.x

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      Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow (pages 162–175)

      JOCHEN B. W. WOLF, TILL BAYER, BERNHARD HAUBOLD, MARKUS SCHILHABEL, PHILIP ROSENSTIEL and DIETHARD TAUTZ

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04471.x

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      A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush) (pages 176–196)

      FREDERICK GOETZ, DANIEL ROSAUER, SHAWN SITAR, GILES GOETZ, CRYSTAL SIMCHICK, STEVEN ROBERTS, RONALD JOHNSON, CHERYL MURPHY, CHARLES R. BRONTE and SIMON MACKENZIE

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04481.x

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      Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes (pages 197–211)

      K. R. ELMER, S. FAN, H. M. GUNTER, J. C. JONES, S. BOEKHOFF, S. KURAKU and A. MEYER

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04488.x

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      Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing (pages 212–227)

      PIERRE FONTANILLAS, CHRISTIAN R. LANDRY, PATRICIA J. WITTKOPP, CARSTEN RUSS, JONATHAN D. GRUBER, CHAD NUSBAUM and DANIEL L. HARTL

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2010.04472.x

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      Genome-wide analysis of alternative splicing evolution among Mus subspecies (pages 228–239)

      BETTINA HARR and LESLIE M. TURNER

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04490.x

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      Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus (pages 240–254)

      LAURA FERGUSON, SIU FAI LEE, NICOLA CHAMBERLAIN, NICOLA NADEAU, MATHIEU JORON, SIMON BAXTER, PAUL WILKINSON, ALEXIE PAPANICOLAOU, SUJAI KUMAR, THUAN-JIN KEE, RICHARD CLARK, CLAIRE DAVIDSON, REBECCA GLITHERO, HELEN BEASLEY, HEIKO VOGEL, RICHARD FFRENCH-CONSTANT and CHRIS JIGGINS

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04475.x

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      Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus (pages 255–265)

      AGNIESZKA KLOCH, WIESŁAW BABIK, ANNA BAJER, EDWARD SIŃSKI and JACEK RADWAN

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04476.x

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      Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species (pages 266–276)

      AXEL KÜNSTNER, JOCHEN B. W. WOLF, NICLAS BACKSTRÖM, OSCEOLA WHITNEY, CHRISTOPHER N. BALAKRISHNAN, LAINY DAY, SCOTT V. EDWARDS, DANIEL E. JANES, BARNEY A. SCHLINGER, RICHARD K. WILSON, ERICH D. JARVIS, WESLEY C. WARREN and HANS ELLEGREN

      Version of Record online: 10 FEB 2010 | DOI: 10.1111/j.1365-294X.2009.04487.x

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      Corrigendum

      Vol. 20, Issue 13, 2871, Version of Record online: 6 JUN 2011

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