Molecular Ecology

Cover image for Vol. 21 Issue 8

Special Issue: ENVIRONMENTAL DNA

April 2012

Volume 21, Issue 8

Pages 1789–2050

  1. Editorial

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. Environmental DNA (pages 1789–1793)

      PIERRE TABERLET, ERIC COISSAC, MEHRDAD HAJIBABAEI and LOREN H. RIESEBERG

      Article first published online: 10 APR 2012 | DOI: 10.1111/j.1365-294X.2012.05542.x

  2. Methodological and Technical Advances

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. You have free access to this content
      Next-generation sequencing technologies for environmental DNA research (pages 1794–1805)

      SHADI SHOKRALLA, JENNIFER L. SPALL, JOEL F. GIBSON and MEHRDAD HAJIBABAEI

      Article first published online: 10 APR 2012 | DOI: 10.1111/j.1365-294X.2012.05538.x

    2. Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA (pages 1806–1815)

      SANNE BOESSENKOOL, LAURA S. EPP, JAMES HAILE, EVA BELLEMAIN, MARY EDWARDS, ERIC COISSAC, ESKE WILLERSLEV and CHRISTIAN BROCHMANN

      Article first published online: 12 OCT 2011 | DOI: 10.1111/j.1365-294X.2011.05306.x

    3. Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies (pages 1816–1820)

      PIERRE TABERLET, SOPHIE M. PRUD’HOMME, ETIENNE CAMPIONE, JULIEN ROY, CHRISTIAN MIQUEL, WASIM SHEHZAD, LUDOVIC GIELLY, DELPHINE RIOUX, PHILIPPE CHOLER, JEAN-CHRISTOPHE CLÉMENT, CHRISTELLE MELODELIMA, FRANÇOIS POMPANON and ERIC COISSAC

      Article first published online: 2 FEB 2012 | DOI: 10.1111/j.1365-294X.2011.05317.x

    4. New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems (pages 1821–1833)

      LAURA S. EPP, SANNE BOESSENKOOL, EVA P. BELLEMAIN, JAMES HAILE, ALFONSO ESPOSITO, TIAYYBA RIAZ, CHRISTER ERSÉUS, VLADIMIR I. GUSAROV, MARY E. EDWARDS, ARILD JOHNSEN, HANS K. STENØIEN, KRISTIAN HASSEL, HÅVARD KAUSERUD, NIGEL G. YOCCOZ, KARI ANNE BRÅTHEN, ESKE WILLERSLEV, PIERRE TABERLET, ERIC COISSAC and CHRISTIAN BROCHMANN

      Article first published online: 10 APR 2012 | DOI: 10.1111/j.1365-294X.2012.05537.x

  3. Bioinformatics Aspects

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. You have free access to this content
      Bioinformatic challenges for DNA metabarcoding of plants and animals (pages 1834–1847)

      ERIC COISSAC, TIAYYBA RIAZ and NICOLAS PUILLANDRE

      Article first published online: 10 APR 2012 | DOI: 10.1111/j.1365-294X.2012.05550.x

    2. A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding (pages 1848–1863)

      A.-B. ZHANG, C. MUSTER, H.-B. LIANG, C.-D. ZHU, R. CROZIER, P. WAN, J. FENG and R. D. WARD

      Article first published online: 29 AUG 2011 | DOI: 10.1111/j.1365-294X.2011.05235.x

    3. ABGD, Automatic Barcode Gap Discovery for primary species delimitation (pages 1864–1877)

      N. PUILLANDRE, A. LAMBERT, S. BROUILLET and G. ACHAZ

      Article first published online: 29 AUG 2011 | DOI: 10.1111/j.1365-294X.2011.05239.x

  4. Microbial Ecology

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. You have free access to this content
    2. Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing (pages 1897–1908)

      RAKEL BLAALID, TOR CARLSEN, SURENDRA KUMAR, RUNE HALVORSEN, KARL INNE UGLAND, GIOVANNI FONTANA and HÅVARD KAUSERUD

      Article first published online: 1 OCT 2011 | DOI: 10.1111/j.1365-294X.2011.05214.x

    3. Exploration of community traits as ecological markers in microbial metagenomes (pages 1909–1917)

      ALBERT BARBERÁN, ANTONI FERNÁNDEZ-GUERRA, BRENDAN J. M. BOHANNAN and EMILIO O. CASAMAYOR

      Article first published online: 28 NOV 2011 | DOI: 10.1111/j.1365-294X.2011.05383.x

    4. Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation (pages 1918–1930)

      KATHLEEN R. STOOF-LEICHSENRING, LAURA S. EPP, MARTIN H. TRAUTH and RALPH TIEDEMANN

      Article first published online: 4 JAN 2012 | DOI: 10.1111/j.1365-294X.2011.05412.x

  5. Diet Analysis

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. You have free access to this content
      Who is eating what: diet assessment using next generation sequencing (pages 1931–1950)

      FRANCOIS POMPANON, BRUCE E. DEAGLE, WILLIAM O. C. SYMONDSON, DAVID S. BROWN, SIMON N. JARMAN and PIERRE TABERLET

      Article first published online: 15 DEC 2011 | DOI: 10.1111/j.1365-294X.2011.05403.x

    2. Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan (pages 1951–1965)

      WASIM SHEHZAD, TIAYYBA RIAZ, MUHAMMAD A. NAWAZ, CHRISTIAN MIQUEL, CAROLE POILLOT, SAFDAR A. SHAH, FRANÇOIS POMPANON, ERIC COISSAC and PIERRE TABERLET

      Article first published online: 17 JAN 2012 | DOI: 10.1111/j.1365-294X.2011.05424.x

  6. Biodiversity Assessment of Plants and Animals

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity (pages 1966–1979)

      KENNETH ANDERSEN, KAREN LISE BIRD, MORTEN RASMUSSEN, JAMES HAILE, HENRIK BREUNING-MADSEN, KURT H. KJÆR, LUDOVIC ORLANDO, M. THOMAS P. GILBERT and ESKE WILLERSLEV

      Article first published online: 14 SEP 2011 | DOI: 10.1111/j.1365-294X.2011.05261.x

    2. Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding (pages 1980–1988)

      TINA JØRGENSEN, KURT H. KJÆR, JAMES HAILE, MORTEN RASMUSSEN, SANNE BOESSENKOOL, KENNETH ANDERSEN, ERIC COISSAC, PIERRE TABERLET, CHRISTIAN BROCHMANN, LUDOVIC ORLANDO, M. THOMAS P. GILBERT and ESKE WILLERSLEV

      Article first published online: 22 SEP 2011 | DOI: 10.1111/j.1365-294X.2011.05278.x

    3. A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability (pages 1989–2003)

      TINA JØRGENSEN, JAMES HAILE, PER MÖLLER, ANDREI ANDREEV, SANNE BOESSENKOOL, MORTEN RASMUSSEN, FRANK KIENAST, ERIC COISSAC, PIERRE TABERLET, CHRISTIAN BROCHMANN, NANCY H. BIGELOW, KENNETH ANDERSEN, LUDOVIC ORLANDO, M. THOMAS P. GILBERT and ESKE WILLERSLEV

      Article first published online: 1 OCT 2011 | DOI: 10.1111/j.1365-294X.2011.05287.x

    4. Plant species richness belowground: higher richness and new patterns revealed by next-generation sequencing (pages 2004–2016)

      INGA HIIESALU, MAARJA ÖPIK, MADIS METSIS, LIISA LILJE, JOHN DAVISON, MARTTI VASAR, MARI MOORA, MARTIN ZOBEL, SCOTT D. WILSON and MEELIS PÄRTEL

      Article first published online: 14 DEC 2011 | DOI: 10.1111/j.1365-294X.2011.05390.x

    5. Tracking earthworm communities from soil DNA (pages 2017–2030)

      FRIEDERIKE BIENERT, SÉBASTIEN DE DANIELI, CHRISTIAN MIQUEL, ERIC COISSAC, CAROLE POILLOT, JEAN-JACQUES BRUN and PIERRE TABERLET

      Article first published online: 17 JAN 2012 | DOI: 10.1111/j.1365-294X.2011.05407.x

  7. Perspectives

    1. Top of page
    2. Editorial
    3. Methodological and Technical Advances
    4. Bioinformatics Aspects
    5. Microbial Ecology
    6. Diet Analysis
    7. Biodiversity Assessment of Plants and Animals
    8. Perspectives
    1. NEWS AND VIEWS

      OPINION
    2. You have free access to this content
    3. Towards next-generation biodiversity assessment using DNA metabarcoding (pages 2045–2050)

      PIERRE TABERLET, ERIC COISSAC, FRANÇOIS POMPANON, CHRISTIAN BROCHMANN and ESKE WILLERSLEV

      Article first published online: 10 APR 2012 | DOI: 10.1111/j.1365-294X.2012.05470.x

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