Molecular Ecology

Cover image for Vol. 22 Issue 11

Special Issue: GENOTYPING BY SEQUENCING IN ECOLOGICAL AND CONSERVATION GENOMICS

June 2013

Volume 22, Issue 11

Pages 2841–3190

  1. Introduction

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. Genotyping-by-sequencing in ecological and conservation genomics (pages 2841–2847)

      Shawn R. Narum, C. Alex Buerkle, John W. Davey, Michael R. Miller and Paul A. Hohenlohe

      Article first published online: 24 MAY 2013 | DOI: 10.1111/mec.12350

  2. Population Genomics

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species (pages 2898–2916)

      Jon E. Hess, Nathan R. Campbell, David A. Close, Margaret F. Docker and Shawn R. Narum

      Article first published online: 3 DEC 2012 | DOI: 10.1111/mec.12150

    2. Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex (pages 2941–2952)

      Federico Roda, Luke Ambrose, Gregory M. Walter, Huanle L. Liu, Andrea Schaul, Andrew Lowe, Pieter B. Pelser, Peter Prentis, Loren H. Rieseberg and Daniel Ortiz-Barrientos

      Article first published online: 24 MAY 2013 | DOI: 10.1111/mec.12311

    3. Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing (pages 3002–3013)

      Paul A. Hohenlohe, Mitch D. Day, Stephen J. Amish, Michael R. Miller, Nick Kamps-Hughes, Matthew C. Boyer, Clint C. Muhlfeld, Fred W. Allendorf, Eric A. Johnson and Gordon Luikart

      Article first published online: 21 FEB 2013 | DOI: 10.1111/mec.12239

    4. Recombination in the threespine stickleback genome—patterns and consequences (pages 3014–3027)

      Marius Roesti, Dario Moser and Daniel Berner

      Article first published online: 22 APR 2013 | DOI: 10.1111/mec.12322

      Corrected by:

      Corrigendum: Corrigendum

      Vol. 22, Issue 20, 5270, Article first published online: 10 OCT 2013

  3. Association and QTL Mapping

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. You have full text access to this OnlineOpen article
      RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene (pages 3077–3089)

      Paul M. Richards, M. Maureen Liu, Natalie Lowe, John W. Davey, Mark L. Blaxter and Angus Davison

      Article first published online: 15 MAR 2013 | DOI: 10.1111/mec.12262

    2. Thermal adaptation and acclimation of ectotherms from differing aquatic climates (pages 3090–3097)

      Shawn R. Narum, Nathan R. Campbell, Kevin A. Meyer, Michael R. Miller and Ronald W. Hardy

      Article first published online: 1 MAR 2013 | DOI: 10.1111/mec.12240

  4. Genomic Resources and SNP Discovery

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. Genome sequence of dwarf birch (Betula nana) and cross-species RAD markers (pages 3098–3111)

      Nian Wang, Marian Thomson, William J. A. Bodles, Robert M. M. Crawford, Harriet V. Hunt, Alan Watson Featherstone, Jaume Pellicer and Richard J. A. Buggs

      Article first published online: 21 NOV 2012 | DOI: 10.1111/mec.12131

    2. Sturgeon conservation genomics: SNP discovery and validation using RAD sequencing (pages 3112–3123)

      R. Ogden, K. Gharbi, N. Mugue, J. Martinsohn, H. Senn, J. W. Davey, M. Pourkazemi, R. McEwing, C. Eland, M. Vidotto, A. Sergeev and L. Congiu

      Article first published online: 8 MAR 2013 | DOI: 10.1111/mec.12234

  5. Software Pipelines

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. Stacks: an analysis tool set for population genomics (pages 3124–3140)

      Julian Catchen, Paul A. Hohenlohe, Susan Bassham, Angel Amores and William A. Cresko

      Article first published online: 23 MAY 2013 | DOI: 10.1111/mec.12354

    2. Reference-free SNP discovery for the Eurasian beaver from restriction site–associated DNA paired-end data (pages 3141–3150)

      Helen Senn, Rob Ogden, Timothee Cezard, Karim Gharbi, Zamin Iqbal, Eric Johnson, Nick Kamps-Hughes, Frank Rosell and Ross McEwing

      Article first published online: 21 FEB 2013 | DOI: 10.1111/mec.12242

  6. Addressing biases of genotyping-by-sequencing

    1. Top of page
    2. Introduction
    3. Population Genomics
    4. Association and QTL Mapping
    5. Genomic Resources and SNP Discovery
    6. Software Pipelines
    7. Addressing biases of genotyping-by-sequencing
    1. You have full text access to this OnlineOpen article
      Special features of RAD Sequencing data: implications for genotyping (pages 3151–3164)

      John W. Davey, Timothée Cezard, Pablo Fuentes-Utrilla, Cathlene Eland, Karim Gharbi and Mark L. Blaxter

      Article first published online: 30 OCT 2012 | DOI: 10.1111/mec.12084

    2. The effect of RAD allele dropout on the estimation of genetic variation within and between populations (pages 3165–3178)

      Mathieu Gautier, Karim Gharbi, Timothee Cezard, Julien Foucaud, Carole Kerdelhué, Pierre Pudlo, Jean-Marie Cornuet and Arnaud Estoup

      Article first published online: 30 OCT 2012 | DOI: 10.1111/mec.12089

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