How to escape from crop-to-weed gene flow: phenological variation and isolation-by-time within weedy sunflower populations
Article first published online: 26 NOV 2012
© 2012 INRA New Phytologist © 2012 New Phytologist Trust
Volume 197, Issue 2, pages 642–654, January 2013
How to Cite
Roumet, M., Noilhan, C., Latreille, M., David, J. and Muller, M.-H. (2013), How to escape from crop-to-weed gene flow: phenological variation and isolation-by-time within weedy sunflower populations. New Phytologist, 197: 642–654. doi: 10.1111/nph.12045
- Issue published online: 18 DEC 2012
- Article first published online: 26 NOV 2012
- Manuscript Accepted: 9 OCT 2012
- Manuscript Received: 27 AUG 2012
- 2006. Assessing environmental risks of transgenic plants. Ecology Letters 9: 196–214. , .
- 1994. Gene flow between cultivated and wild sunflowers. Theoretical and Applied Genetics 89: 655–660. , .
- 2004. Natural hybridization and the evolution of domesticated, pest and disease organisms. Molecular Ecology 13: 997–1007. .
- 2007. Seeking agriculture's ancient roots. Science 316: 1830–1835. .
- 2009. A weed–crop complex in sorghum: the dynamics of genetic diversity in a traditional farming system. American Journal of Botany 96: 1869–1879. , , , , , , , .
- 2004. Weed genomics: new tools to understand weed biology. Trends in Plant Science 9: 391–398. , , , .
- 2001. GENETIX 4.02, logiciel sous Windows™ pour la génétique des populations. Montpellier, France: Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II. , , , , .
- 2011. Connecting the sun to flowering in sunflower adaptation. Molecular Ecology 20: 3503–3512. , , .
- 1993. The origin and evolution of weed beets: consequences for the breeding and release of herbicide-resistant transgenic sugar beets. Theoretical and Applied Genetics 87: 471–478. , , , , .
- 2002. The potential for gene flow between cultivated and wild sunflower (Helianthus annuus) in the United States. American Journal of Botany 89: 1550–1552. , , .
- 2011. Gene flow from herbicide-tolerant GM rice and the heterosis of GM rice-weed F2 progeny. Planta 233: 807–815. , , , , , , , , , .
- 2005. Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity. Oikos 110: 20–29. , , , .
- 2002. Fecundity selection in a sunflower crop–wild study: can ecological data predict crop allele changes? Ecological Applications 12: 1661–1671. , , , , , .
- 2008. Incipient allochronic speciation due to non-selective assortative mating by flowering time, mutation and genetic drift. Proceedings of the Royal Society B: Biological Sciences 275: 2723–2732. , .
- 2003. Current knowledge of gene flow in plants: implications for transgene flow. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 358: 1163–1170. .
- 2010. Crops gone wild: evolution of weeds and invasives from domesticated ancestors. Evolutionary Applications 3: 494–504. , , , , , , , .
- 2002. Potential gene flow from cultivated sunflower to volunteer, wild Helianthus species in Europe. Agriculture, Ecosystems and Environment 89: 183–190. , , .
- 2003. Assortative mating and plant phenology: evolutionary and practical consequences. Evolutionary Ecology Research 5: 1–18. .
- 2007. Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. Proceedings of the National Academy of Sciences, USA 104: 1278–1282. , , .
- 2009. Climate change alters reproductive isolation and potential gene flow in an annual plant. Evolutionary Applications 2: 481–488. , .
- 2010. Selection pressures have caused genome-wide population differentiation of Anthoxanthum odoratum despite the potential for high gene flow. Journal of Evolutionary Biology 23: 776–782. , , , .
- 2006a. Temporal cline in a hybrid zone population between Fraxinus excelsior L. and Fraxinus angustifolia Vahl. Molecular Ecology 15: 3655–3667. , , .
- 2006b. Assortative mating and differential male mating success in an ash hybrid zone population. BMC Evolutionary Biology 6: 96. , , , , .
- 2011. Anthropogenic fire drives the evolution of seed traits. Proceedings of the National Academy of Sciences, USA 108: 18743–18747. , , , .
- 2001. FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). [WWW document] URL http://www2.unil.ch/popgen/softwares/fstat.htm [accessed on 6 April 2006]. .
- 1996. Testing differentiation in diploid populations. Genetics 144: 1933–1940. , , , .
- 2005. Contributions of domesticated plant studies to our understanding of plant evolution. Annals of Botany 96: 953–963. .
- 2002. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2: 618–620. , .
- 2004. Origin of extant domesticated sunflowers in eastern North America. Nature 430: 201–205. , , , , , .
- 2005. Population structure attributable to reproductive time: isolation by time and adaptation by time. Molecular Ecology 14: 901–916. , .
- 2005. Common sunflower (Helianthus annuus var. annuus) - potential threat to coexistence of sunflower crops in Central Europe. In: Messean S, ed. 2nd European Conference on Co-Existence between GM and non-GM based agricultural supply chain. Montpellier, France: Agropolis Productions, 271–272. , , , .
- 2003. Crop-to-wild gene flow, introgression and possible fitness effects of transgene. Environmental Biosafety Research 2: 9–24. , , .
- 2003. Methods of parentage analysis in natural population. Molecular Ecology 12: 2511–2523. , .
- 2008. Genetics and evolution of weedy Helianthus annuus populations: adaptation of an agricultural weed. Molecular Ecology 17: 384–394. , .
- 2000. Directional selection on initial flowering date in Phlox drummondii (Polemoniaceae). American Journal of Botany 87: 382–391. , .
- 2010. The making of a rapid plant invader: genetic diversity and differentiation in the native and invaded range of Senecio inaequidens. Molecular Ecology 19: 3952–3967. , , .
- 2002. Gene flow and the limits to natural selection. Trends in Ecology and Evolution 17: 183–189. .
- 1995. Spatial genetic-structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany 82: 1420–1425. , , , .
- 2006. Evidence for isolation by time in the European eel (Anguilla anguilla L.). Molecular Ecology 15: 2095–2107. , , , .
- 2006. Effects of competition on the fitness of wild and crop–wild hybrid sunflower from a diversity of wild populations and crop lines. Evolution 60: 2044–2055. , , .
- 2009. Occurrence, distribution and distinctive morphological traits of weedy Helianthus annuus L. populations in Spain and France. Genetic Resources and Crop Evolution 56: 869–877. , , , , , , , , .
- 2011. The origin and evolution of a recent agricultural weed: population genetic diversity of weedy populations of sunflower (Helianthus annuus L.) in Spain and France. Evolutionary Applications 4: 499–514. , , .
- 1987. Molecular evolutionary genetics. New York, NY, USA: Columbia University Press. .
- 2006. Real-time patterns of pollen flow in the wild-service tree, Sorbus torminalis (Rosaceae). III. Mating patterns and the ecological maternal neighborhood. American Journal of Botany 93: 1650–1659. , , , .
- 2010. Using linked markers to estimate the genetic age of a volunteer population: a theoretical and empirical approach. Heredity 105: 358–369. , , , , , , .
- 2004. Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Molecular Ecology 13: 55–65. , , , .
- 1998. Identifying populations for conservation on the basis of genetic markers. Conservation Biology 12: 844–855. , , .
- 2004. Patterns of population structure in maize landraces from the central Valleys of Oaxaca in Mexico. Heredity 92: 88–94. , .
- R Development Core Team. 2008. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing: Vienna, Austria, ISBN 3-900051-07-0. [WWW document] URL http://www.R-project.org.
- 2006. Cultivated Helianthus annuus (Asteraceae) volunteers as a genetic “bridge” to weedy sunflower populations in North America. American Journal of Botany 93: 127–133. , .
- 2010. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evolutionary Biology 10: 180. , , , , , .
- 2012. Estimation of mating system parameters in an evolving gynodioecous population of cultivated sunflower (Helianthus annuus L.). Heredity 108: 366–374. , , , , .
- 2005. Genetically engineered organisms and the environment: current status and recommendations. Ecological Applications 15: 377–404. , , , , , , .
- 1998. Fecundity, phenology, and seed dormancy of F1 wild–crop hybrids in sunflower (Helianthus annuus, Asteraceae). American Journal of Botany 85: 794–801. , , , , .
- 2003. Transgene introgression from genetically modified crops to their wild relatives. Nature Reviews – Genetics 4: 806–817. , , .
- 2002. Simple sequence repeat map of the sunflower genome. Theoretical and Applied Genetics 105: 1124–1136. , , , , .
- 2005. Asian rice and weedy rice – evolutionary perspectives. In: Gressel J, ed. Crop ferality and volunteerism. Boca Raton, FL, USA: CRC Press, Taylor and Francis Group, 257–277. , , , , .
- 2004. New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology 13: 921–935. , .
- 2006. Dispersal of wild sunflower by seed and persistent basal stalks in some areas of central Italy. Helia 45: 89–94. , , , , .
- 1984. Estimating F-statistics for the analysis of population-structure. Evolution 38: 1358–1370. , .
- 2004. Genetic variation in flowering time induces phenological assortative mating: quantitative genetic methods applied to Brassica rapa. American Journal of Botany 91: 825–836. , .
- 1995. The selection barrier between populations subject to stabilizing selection. Evolution 49: 490–501. , .