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  • Agalou A, Purwantomo S, Overnas E, Johannesson H, Zhu X, Estiati A, de Kam RJ, Engstrom P, Slamet-Loedin IH, Zhu Z et al. 2008. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Molecular Biology 66: 87103.
  • Aoyama T, Dong CH, Wu Y, Carabelli M, Sessa G, Ruberti I, Morelli G, Chua NH. 1995. Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco. Plant Cell 7: 17731785.
  • Arce AL, Raineri J, Capella M, Cabello JV, Chan RL. 2011. Uncharacterized conserved motifs outside the HD-Zip domain in HD-Zip subfamily I transcription factors; a potential source of functional diversity. BMC Plant Biology 11: 42.
  • Ariel F, Diet A, Verdenaud M, Gruber V, Frugier F, Chan R, Crespi M. 2010. Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor HB1. Plant Cell 22: 21712183.
  • Ariel FD, Manavella PA, Dezar CA, Chan RL. 2007. The true story of the HD-Zip family. Trends in Plant Science 12: 419426.
  • Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M. 2005. Cytokinin oxidase regulates rice grain production. Science 309: 741745.
  • Baima S, Nobili F, Sessa G, Lucchetti S, Ruberti I, Morelli G. 1995. The expression of the Athb-8 homeobox gene is restricted to provascular cells in Arabidopsis thaliana. Development 121: 41714182.
  • Barkworth M. 2002. Hilaria kunth. Utah State Univ. Intermountain Herbarium. [WWW document] URL http://herbarium.usu.edu/treatments/hilaria.htm [accessed 24 October 2012]
  • Bothmer R, Jacobsen N, Baden C, Jorgensen R, Linde-Laursen I. 1995. An ecogeographical study of the genus Hordeum. Rome, Italy: IBPGR.
  • Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y. 2006. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana. Genome Biology 7: R13.
  • Depege-Fargeix N, Javelle M, Chambrier P, Frangne N, Gerentes D, Perez P, Rogowsky PM, Vernoud V. 2012. Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize. Journal of Experimental Botany 62: 293305.
  • Doebley J, Stec A, Hubbard L. 1997. The evolution of apical dominance in maize. Nature 386: 485488.
  • Druka A, Franckowiak J, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al. 2011. Genetic dissection of barley morphology and development. Plant Physiology 155: 617627.
  • Forster BP, Franckowiak JD, Lundqvist U, Lyon J, Pitkethly I, Thomas WT. 2007. The barley phytomer. Annals of Botany 100: 725733.
  • Ganko EW, Meyers BC, Vision TJ. 2007. Divergence in expression between duplicated genes in Arabidopsis. Molecular Biology and Evolution 24: 22982309.
  • Green KA, Prigge MJ, Katzman RB, Clark SE. 2005. CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell 17: 691704.
  • Hanada K, Kuromori T, Myouga F, Toyoda T, Shinozaki K. 2009. Increased expression and protein divergence in duplicate genes is associated with morphological diversification. PLoS Genetics 5: e1000781.
  • Henriksson E, Olsson AS, Johannesson H, Johansson H, Hanson J, Engstrom P, Soderman E. 2005. Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogenetic relationships. Plant Physiology 139: 509518.
  • Hensel G, Valkov V, Middlefell-Williams J, Kumlehn J. 2008. Efficient generation of transgenic barley: the way forward to modulate plant–microbe interactions. Journal of Plant Physiology 165: 7182.
  • Himmelbach A, Hoffmann T, Leube M, Hohener B, Grill E. 2002. Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis. EMBO Journal 21: 30293038.
  • Himmelbach A, Zierold U, Hensel G, Riechen J, Douchkov D, Schweizer P, Kumlehn J. 2007. A set of modular binary vectors for transformation of cereals. Plant Physiology 145: 11921200.
  • Hofer J, Turner L, Moreau C, Ambrose M, Isaac P, Butcher S, Weller J, Dupin A, Dalmais M, Le Signor C et al. 2009. Tendril-less regulates tendril formation in pea leaves. Plant Cell 21: 420428.
  • Hughes AL. 1994. The evolution of functionally novel proteins after gene duplication. Proceedings. Biological Sciences 256: 119124.
  • Itoh J, Hibara K, Sato Y, Nagato Y. 2008. Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiology 147: 19601975.
  • Kirby EJM, Appleyard M. 1981. Cereal development guide. Kenilworth, UK: Cereal Unit.
  • Komatsuda T, Pourkheirandish M, He C, Azhaguvel P, Kanamori H, Perovic D, Stein N, Graner A, Wicker T, Tagiri A et al. 2007. Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proceedings of the National Academy of Sciences, USA 104: 14241429.
  • Lee YH, Oh HS, Cheon CI, Hwang IT, Kim YJ, Chun JY. 2001. Structure and expression of the Arabidopsis thaliana homeobox gene Athb-12. Biochemical and Biophysical Research Communications 284: 133141.
  • Lundqvist U, Franckowiak JD, Konishi T. 1997. New and revised descriptions of barley genes. Barley Genetics Newsletter 26: 22516.
  • McConnell JR, Emery J, Eshed Y, Bao N, Bowman J, Barton MK. 2001. Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411: 709713.
  • Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M. 2010. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nature Genetics 42: 545549.
  • Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W, Duboule D. 2011. The dynamic architecture of Hox gene clusters. Science 334: 222225.
  • Oakley TH, Ostman B, Wilson AC. 2006. Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences, USA 103: 1163711641.
  • Ohno S. 1970. Evolution by gene duplication. Berlin, Germany; New York, NY, USA: Springer-Verlag.
  • Ohta M, Ohme-Takagi M, Shinshi H. 2000. Three ethylene-responsive transcription factors in tobacco with distinct transactivation functions. Plant Journal 22: 2938.
  • Pourkheirandish M, Komatsuda T. 2007. The importance of barley genetics and domestication in a global perspective. Annals of Botany 100: 9991008.
  • Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN, Clark SE. 2005. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 17: 6176.
  • Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WT, Macaulay M, MacKenzie K, Simpson C, Fuller J, Bonar N et al. 2011. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nature Genetics 43: 169172.
  • Sablowski RW, Moyano E, Culianez-Macia FA, Schuch W, Martin C, Bevan M. 1994. A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes. EMBO Journal 13: 128137.
  • Saisho D, Pourkheirandish M, Kanamori H, Matsumoto T, Komatsuda T. 2009. Allelic variation of row type gene Vrs1 in barley and implication of the functional divergence. Breeding Science 59: 621628.
  • Sakuma S, Pourkheirandish M, Matsumoto T, Koba T, Komatsuda T. 2010. Duplication of a well-conserved homeodomain-leucine zipper transcription factor gene in barley generates a copy with more specific functions. Functional & Integrative Genomics 10: 123133.
  • Sato Y, Antonio BA, Namiki N, Takehisa H, Minami H, Kamatsuki K, Sugimoto K, Shimizu Y, Hirochika H, Nagamura Y. 2010. RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions. Nucleic Acids Research 39: D1141D1148.
  • Scarpella E, Rueb S, Boot KJ, Hoge JH, Meijer AH. 2000. A role for the rice homeobox gene Oshox1 in provascular cell fate commitment. Development 127: 36553669.
  • Sentoku N, Sato Y, Kurata N, Ito Y, Kitano H, Matsuoka M. 1999. Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development. Plant Cell 11: 16511664.
  • Sessa G, Morelli G, Ruberti I. 1993. The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities. EMBO Journal 12: 35073517.
  • Talbert PB, Adler HT, Parks DW, Comai L. 1995. The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 121: 27232735.
  • Wang Y, Henriksson E, Soderman E, Henriksson KN, Sundberg E, Engstrom P. 2003. The Arabidopsis homeobox gene, ATHB16, regulates leaf development and the sensitivity to photoperiod in Arabidopsis. Developmental Biology 264: 228239.
  • Whipple CJ, Kebrom TH, Weber AL, Yang F, Hall D, Meeley R, Schmidt R, Doebley J, Brutnell TP, Jackson DP. 2011. grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proceedings of the National Academy of Sciences, USA 108: E506E512.
  • Xiao H, Jiang N, Schaffner E, Stockinger EJ, van der Knaap E. 2008. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science 319: 15271530.
  • Yamaji N, Ma JF. 2007. Spatial distribution and temporal variation of the rice silicon transporter Lsi1. Plant Physiology 143: 13061313.
  • Zhao Y, Zhou Y, Jiang H, Li X, Gan D, Peng X, Zhu S, Cheng B. 2011. Systematic analysis of sequences and expression patterns of drought-responsive members of the HD-Zip gene family in maize. PLoS ONE 6: e28488.