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Fig. S1 Percentage of plants with different chromosome numbers assessed by flow cytometry in the progeny of Brassica rapa × Brassica napus (AAC) hybrids crossed to their recurrent parents Darmor or Eurol.

Fig S2 Interaction phenotypes of wild-type and transformed Leptosphaeria maculans isolates with AvrLm11 candidate genes.

Fig. S3 Evolution of the frequency of the dispensable chromosome in field populations of Leptosphaeria maculans under different fitness cost hypotheses.

Table S1 PCR primers used in this study

Table S2 Analysis of the progeny of crosses between a resistant Brassica rapa plant (2n = 20) and the susceptible Brassica napus (2n = 38) variety Darmor

Table S3 Analysis of the progeny of crosses between a resistant Brassica rapa plant (2n = 20) and the susceptible Brassica napus (2n = 38) variety Eurol

Table S4 List and characteristics of SC22 predicted genes

Table S5 List and characteristics of SC22 predicted proteins

Table S6 Interaction phenotypes of wild-type or transformed Leptosphaeria maculans isolates on a Brassica differential set

Methods S1 Inoculation tests and modelling the loss of the dispensable chromosome in Leptosphaeria maculans populations.