SEARCH

SEARCH BY CITATION

References

  • Atkins CA, Smith PM, Rodriguez-Medina C. 2011. Macromolecules in phloem exudates-a review. Protoplasma 248: 165172.
  • Au PC, Zhu QH, Dennis ES, Wang MB. 2011. Long non-coding RNA-mediated mechanisms independent of the RNAi pathway in animals and plants. RNA Biology 8: 404414.
  • Banerjee AK, Lin T, Hannapel DJ. 2009. Untranslated regions of a mobile transcript mediate RNA metabolism. Plant Physiology 151: 18311843.
  • Bardou F, Merchan F, Ariel F, Crespi M. 2011. Dual RNAs in plants. Biochimie 93: 19501954.
  • Ben Amor B, Wirth S, Merchan F, Laporte P, d'Aubenton-Carafa Y, Hirsch J, Maizel A, Mallory A, Lucas A, Deragon JM et al. 2009. Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses. Genome Research 19: 5769.
  • Buhtz A, Pieritz J, Springer F, Kehr J. 2010. Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biology 10: 64.
  • Bungard RA. 2004. Photosynthetic evolution in parasitic plants: insight from the chloroplast genome. BioEssays 26: 235247.
  • Campalans A, Kondorosi A, Crespi M. 2004. Enod40, a short open reading frame-containing mRNA, induces cytoplasmic localization of a nuclear RNA binding protein in Medicago truncatula. Plant Cell 16: 10471059.
  • Chinnusamy V, Zhu JK. 2009. Epigenetic regulation of stress responses in plants. Current Opinion in Plant Biology 12: 133139.
  • Clark M, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS. 2012. Genome-wide analysis of long noncoding RNA stability. Genome Research 22: 885.
  • Daròs JA, Flores R. 2002. A chloroplast protein binds a viroid RNA in vivo and facilitates its hammerhead-mediated self-cleavage. EMBO Journal 21: 749759.
  • Ding B. 2009. The biology of viroid–host interactions. Annual Review of Phytopathology 47: 105131.
  • Flores R, Semancik JS. 1982. Properties of a cell-free system for synthesis of citrus exocortis viroid. Proceedings of the National Academy of Sciences, USA 79: 62856288.
  • Franco-Zorrilla JM, Valli A, Todesco M, Mateos I, Puga MI, Rubio-Somoza I, Leyva A, Weigel D, García JA, Paz-Ares J. 2007. Target mimicry provides a new mechanism for regulation of microRNA activity. Nature Genetics 39: 10331037.
  • Gas ME, Hernández C, Flores R, Daròs JA. 2007. Processing of nuclear viroids in vivo: an interplay between RNA conformations. PLoS Pathogens 3: e182.
  • Gómez G, Martínez G, Pallás V. 2008. Viroid-induced symptoms in N. benthamiana plants are dependent on RDR6 activity. Plant Physiology 148: 414423.
  • Gómez G, Martínez G, Pallás V. 2009. Interplay between viroid-induced pathogenesis and RNA silencing pathways. Trends in Plant Science 14: 264269.
  • Gómez G, Pallás V. 2001. Identification of a ribonucleoprotein complex between a viroid RNA and a phloem protein from cucumber. Molecular Plant–Microbe Interactions 14: 910913.
  • Gómez G, Pallás V. 2004. A long distance translocatable phloem protein from cucumber forms a ribonucleoprotein complex in vivo with Hop stunt viroid RNA. Journal of Virology 78: 1010410110.
  • Gómez G, Pallás V. 2007. Mature monomeric forms of Hop stunt viroid resist RNA silencing in transgenic plants. Plant Journal 51: 10411049.
  • Gómez G, Pallás V. 2010a. Noncoding RNA mediated traffic of foreign mRNA into chloroplasts reveals a novel signaling mechanism in plants. PLoS ONE 5: e12269.
  • Gómez G, Pallás V. 2010b. Can the import of mRNA into chloroplasts be mediated by a secondary structure of a small non-coding RNA? Plant Signaling & Behavior 5: 15171519.
  • Gómez G, Pallás V. 2012a. Studies on subcellular compartmentalization of plant pathogenic noncoding RNAs give new insights into the intracellular RNA-traffic mechanisms. Plant Physiology 159: 558564.
  • Gómez G, Pallás V. 2012b. A pathogenic noncoding RNA that replicates and accumulates in chloroplasts traffics this organelle through a nuclear-dependent step. Plant Signaling & Behavior 7: 882884.
  • Gómez G, Torres H, Pallás V. 2005. Identification of translocatable RNA-binding phloem proteins from melon, potential components of the long-distance RNA transport system. Plant Journal 41: 107116.
  • Ham BK, Brandom JL, Xoconostle-Cázares B, Ringgold V, Lough TJ, Lucas WJ. 2009. A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex. Plant Cell 21: 197215.
  • Hannapel DJ. 2010. A model system of development regulated by the long-distance transport of mRNA. Journal of Integrative Plant Biology 52: 4052.
  • Heo JB, Sung S. 2010. Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. Science 331: 7679.
  • Iorizzo M, Grzebelus D, Senalik D, Szklarczyk M, Spooner D, Simon P. 2012. Against the traffic: the first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements 2: 16.
  • Itaya A, Matsuda Y, Gonzales RA, Nelson RS, Ding B. 2002. Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato. Molecular Plant–Microbe Interactions 15: 990999.
  • Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R, Harris AR, Molina C, Nelson RS, Ding B. 2007. A structured viroid RNA substrate for Dicer-Like cleavage to produce biologically active sRNAs but is resistant to RISC-mediated degradation. Journal of Virology 81: 29802994.
  • Li P, Ham BK, Lucas WJ. 2011. CmRBP50 protein phosphorylation is essential for assembly of a stable phloem-mobile high-affinity ribonucleoprotein complex. Journal of Biological Chemistry 286: 2314223149.
  • Lough TJ, Lucas WJ. 2006. Integrative plant biology: role of phloem long-distance macromolecular trafficking. Annual Review of Plant Biology 57: 203232.
  • Mackiewicz P, Bodył A, Gagat P. 2012. Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. Theory in Biosciences 131: 118.
  • Martínez de Alba AE, Sägesser R, Tabler M, Tsagris M. 2003. A bromodomain-containing protein from tomato specifically binds potato spindle tuber viroid RNA in vitro and in vivo. Journal of Virology 77: 96859694.
  • Mattick J. 2009. The genetic signatures of noncoding RNAS. PLoS Genetics 5: e1000459.
  • Melnyk CW, Molnar A, Baulcombe DC. 2011. Intercellular and systemic movement of RNA silencing signals. EMBO Journal 30: 35533563.
  • Mühlbach HP, Sänger HL. 1997. Viroid replication is inhibited by alpha-amanitin. Nature 278: 185188.
  • Navarro B, Gisel A, Rodio ME, Delgado S, Flores R, Di Serio F. 2012. Small RNAs containing the pathogenic determinant of a chloroplast-replicating viroid guide the degradation of a host mRNA as predicted by RNA silencing. Plant Journal 70: 9911003.
  • Navarro JA, Vera A, Flores R. 2000. A chloroplastic RNA polymerase resistant to tagetitoxin is involved in replication of avocado sunblotch viroid. Virology 268: 218225.
  • Nohales MA, Flores R, Daròs JA. 2012a. Viroid RNA redirects host DNA ligase1 to act as RNA ligase. Proceedings of the National Academy of Sciences, USA 109: 1380513811.
  • Nohales MA, Molina-Serrano D, Flores R, Daròs JA. 2012b. Involvement of the chloroplastic isoform of tRNA ligase in the replication of viroids belonging to the family Avsunviroidae. Journal of Virology 86: 82698276.
  • Owens RA, Blackburn M, Ding B. 2001. Possible involvement of a phloem lectin in long distance viroid movement. Molecular Plant–Microbe Interactions 14: 905909.
  • Papaefthimiou I, Hamilton AJ, Denti MA, Baulcombe DC, Tsagris M, Tabler M. 2001. Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing. Nucleic Acids Research 29: 23952400.
  • Pelchat M, Coté F, Perreault JP. 2001. Study of the polymerization step of the rolling circle replication of peach latent mosaic viroid. Archives Virology 146: 17531763.
  • Pelchat M, Grenier C, Perreault JP. 2002. Characterization of a viroid-derived RNA promoter for the DNA-dependent RNA polymerase from Escherichia coli. Biochemistry 41: 65616571.
  • Poltronieri P, Santino A. 2012. Non-coding RNAs in intercellular and systemic signaling. Frontiers in Plant Science 3: 141.
  • Przybilski R, Gräf S, Lescoute A, Nellen W, Westhof E, Steger G, Hammann C. 2005. Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana. Plant Cell 17: 18771885.
  • Rinn JL, Chang HY. 2012. Genome regulation by long noncoding RNAs. Annual Review of Biochemistry 81: 145166.
  • Röther S, Meister G. 2011. Small RNAs derived from longer non-coding RNAs. Biochimie 93: 19051915.
  • Shimura H, Pantaleo V, Ishihara T, Myojo N, Inaba J, Sueda K, Burgyán J, Masuta C. 2011. A viral satellite RNA induces yellow symptoms on tobacco by targeting a gene involved in chlorophyll biosynthesis using the RNA silencing machinery. PLoS Pathogens 7: e100202.
  • Sugiyama R, Kazama Y, Miyazawa Y, Matsunaga S, Kawano S. 2003. CCLS96.1, a member of a multicopy gene family, may encode a non-coding RNA preferentially transcribed in reproductive organs of Silene latifolia. DNA Research 10: 213220.
  • Tessitori M, Maria G, Capasso C, Catara G, Rizza S, DeLuca V, Catara A, Capasso A, Carginale V. 2007. Differential display analysis of gene expression in Etrog citron leaves infected by Citrus viroid III. Biochimica et Biophysica Acta 1769: 228235.
  • Wang K, Chang HY. 2011. Molecular mechanisms of long noncoding RNAs. Molecular Cell 43: 904914.
  • Wang MB, Bian XY, Wu LM, Liu LX, Smith NA, Isenegger D, Wu RM, Masuta C, Vance VB, Watson JM et al. 2004. On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proceedings of the National Academy of Sciences, USA 101: 32753280.
  • Wang Y, Ding B. 2010. Viroids: small probes for exploring the vast universe of RNA trafficking in plants. Journal of Integrative Plant Biology 52: 2839.
  • Wassenegger M, Heimes S, Riedel L, Sänger H. 1994. RNA-directed de novo methylation of genomic sequences in plants. Cell 76: 567576.
  • Wierzbicki AT. 2012. The role of long non-coding RNA in transcriptional gene silencing. Current Opinion in Plant Biology 15: 16.
  • Woo Y, Itaya A, Owens R, Tang L, Hammond R, Chou H, Lai M, Ding B. 1999. Characterization of nuclear import of potato spindle tuber viroid RNA in permeabilized protoplasts. Plant Journal 17: 627635.
  • Zhao Y, Owens RA, Hammond RW. 2001. Use of a vector based on Potato virus X in a whole plant assay to demonstrate nuclear targeting of potato spindle tuber viroid. Journal of General Virology 82: 14911497.
  • Zhong X, Ding B. 2008. Distinct RNA motifs mediate systemic RNA trafficking. Plant Signaling Behavior 3: 5859.