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References

  • Armstrong W. 1980. Aeration in higher plants. In: Woolhouse HW, ed. Advances in botanical research. London, UK: Academic Press, 225332.
  • Arrizumi T, Murase K, Sun TP, Steber CM. 2008. Proteolysis-independent downregulation of DELLA repression in Arabidopsis by the gibberellin receptor GIBBERELLIN INSENSITIVE DWARF1. Plant Cell 20: 24472459.
  • Bai MY, Shang JX, Oh E, Fan M, Bai Y, Zentella R, Sun TP, Wang ZY. 2012. Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis. Nature Cell Biology 14: 810817.
  • Bai MY, Zhang LY, Gampala SS, Zhu SW, Song WY, Chong K, Wang ZY. 2007. Functions of OsBZR1 and 14–3-3 proteins in brassinosteroid signaling in rice. Proceedings of the National Academy of Sciences, USA 104: 13,83913,844.
  • Colmer TD. 2003. Long-distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots. Plant, Cell & Environment 26: 1736.
  • De Vleesschauwer D, Van Buyten E, Satoh K, Balidion J, Mauleon R, Choi IR, Vera-Cruz C, Kikuchi S, Höfte M. 2012. Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice. Plant Physiology 158: 18331846.
  • Fan XY, Sun Y, Cao DM, Bai MY, Luo XM, Yang HJ, Wei CQ, Zhu SW, Sun Y, Chong K et al. 2012. BZS1, a B-box protein, promotes photomorphogenesis downstream of both brassinosteroid and light signaling pathways. Molecular Plant 5: 591600.
  • Fukao T, Bailey-Serres J. 2008. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences, USA 105: 16,81416,819.
  • Fukao T, Xu K, Ronald PC, Bailey-Serres J. 2006. A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. Plant Cell 18: 20212034.
  • Fukao T, Yeung E, Bailey-Serres J. 2011. The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. Plant Cell 23: 412427.
  • Gallego-Bartolomé J, Minguet EG, Grau-Enguix F, Abbas M, Locascio A, Thomas SG, Alabadí D, Blázquez MA. 2012. Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis. Proceedings of the National Academy of Sciences, USA 109: 13,44613,451.
  • Gao XH, Xiao SL, Yao QF, Wang YJ, Fu XD. 2011. An updated GA signaling ‘relief of repression’ regulatory model. Molecular Plant 4: 601606.
  • Hao Y, Oh E, Choi G, Liang Z, Wang ZY. 2012. Interactions between HLH and bHLH factors modulate light-regulated plant development. Molecular Plant 5: 688697.
  • Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H et al. 2009. The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature 460: 10261030.
  • He JX, Gendron JM, Sun Y, Gampala SS, Gendron N, Sun CQ, Wang ZY. 2005. BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses. Science 307: 16341638.
  • Ismail AM, Ella ES, Vergara GV, Mackill DJ. 2009. Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa). Annals of Botany 103: 197209.
  • Itoh H, Shimada A, Ueguchi-Tanaka M, Kamiya N, Hasegawa Y, Ashikari M, Matsuoka M. 2005. Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice. Plant Journal 44: 669679.
  • Itoh H, Ueguchi-Tanaka M, Sato Y, Ashikari M, Matsuoka M. 2002. The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei. Plant Cell 14: 5770.
  • Jeong DH, Lee S, Kim SL, Hwang I, An G. 2007. Regulation of brassinosteroid responses by Phytochrome B in rice. Plant, Cell & Environment 30: 590599.
  • Jung KH, Seo YS, Walia H, Cao P, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald PC. 2010. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology 152: 16741692.
  • Kawano N, Ito O, Sakagami JI. 2008. Relationship between shoot elongation and dry matter weight during submergence in Oryza sativa L. and O. glaberrima Steud. rice cultivars. Proceedings of the National Academy of Sciences, USA 11: 316323.
  • Koh S, Lee SC, Kim MK, Koh JH, Lee S, An G, Choe S, Kim SR. 2007. T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses. Plant Molecular Biology 65: 453466.
  • Komorisono M, Ueguchi-Tanaka M, Aichi I, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M, Sazuka T. 2005. Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant Katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling. Plant Physiology 138: 19821993.
  • Li C, Wang WH. 2001. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proceedings of the National Academy of Sciences, USA 98: 3136.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) Method. Methods 25: 402408.
  • Mackill DJ, Amante MM, Vergara BS, Sarkarung S. 1993. Improved semidwarf rice lines with tolerance to submergence of seedlings. Crop Science 33: 749753.
  • Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. 2008. The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant Journal 56: 613626.
  • Molnar G, Bancos S, Nagy F, Szekeres M. 2002. Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana. Planta 215: 127133.
  • Mustroph A, Lee SC, Oosumi T, Zanetti ME, Yang H, Ma K, Yaghoubi-Masihi A, Fukao T, Bailey-Serres J. 2010. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiology 152: 14841500.
  • Nakagawa H, Tanaka A, Mori M. 2011. Brassinosteroid signaling in rice. In: Hayat S, Ahmad A, eds. Brassinosteroids: a class of plant hormone. Dordrecht, the Netherlands: Springer, 83117.
  • Nakano T, Suzuki K, Fujimura T, Shinshi H. 2006. Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiology 140: 411432.
  • Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Van Lijsebettens M, Kamiya Y, Inze D, Beemster GT. 2012. A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division. Current Biology 22: 11831187.
  • Oh E, Zhu JY, Wang ZY. 2012. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses. Nature Cell Biology 14: 802809.
  • Schomburg FM, Bizzell CM, Lee DJ, Zeevaart JA, Amasino RM. 2003. Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants. Plant Cell 15: 151163.
  • Setter TL, Ellis M, Laureles EV, Ella ES, Senadhira D, Mishra SB, Sarkarung S, Datta S. 1997. Physiology and genetics of submergence tolerance in rice. Annals of Botany 79: 6777.
  • Setter TL, Waters I, Wallace I, Bhekasut P, Greenway H. 1989. Submergence of rice. 1. Growth and photosynthetic response to CO2 enrichment of floodwater. Australian Journal of Plant Physiology 16: 251263.
  • Stokes KD, McAndrew RS, Figueroa R, Vitha S, Osteryoung KW. 2000. Chloroplast division and morphology are differentially affected by overexpression of FtsZ1 and FtsZ2 genes in Arabidopsis. Plant Physiology 124: 16681677.
  • Sun TP. 2011. The molecular mechanism and evolution of the GA-GID1-DELLA signaling module in plants. Current Biology 21: 338345.
  • Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E et al. 2010. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis. Developmental Cell 19: 765777.
  • Tanabe S, Ashikari M, Fujioka S, Takatsuto S, Yoshida S, Yano M, Yoshimura A, Kitano H, Matsuoka M, Fujisawa Y et al. 2005. A novel cytochrome P450 is implicated in brassinosteroid biosynthesis via the characterization of a rice dwarf mutant, dwarf11, with reduced seed length. Plant Cell 17: 776790.
  • Tong H, Liu L, Jin Y, Du L, Yin Y, Qian Q, Zhu L, Chu C. 2012. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-Like kinase to mediate brassinosteroid responses in rice. Plant Cell 24: 25622577.
  • Ueguchi-Tanaka M, Nakajima M, Katoh E, Ohmiya H, Asano K, Saji S, Hongyu X, Ashikari M, Kitano H, Yamaguchi I et al. 2007. Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Plant Cell 19: 21402155.
  • Voesenek LACJ, Colmer TD, Pierik R, Millenaar FF, Peeters AJM. 2006. How plants cope with complete submergence. New Phytologist 170: 213226.
  • Wada K, Marumo S, Ikekawa N, Morisaki M, Mori K. 1981. Brassinolide and homobrassinolide promotion of lamina inclination of rice seedlings. Plant and Cell Physiology 22: 323325.
  • Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Zeng L, Wanamaker SI, Mandal J, Xu J, Cui X et al. 2005. Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiology 139: 822835.
  • Xu K, Mackill DJ. 1996. A major locus for submergence tolerance mapped on rice chromosome 9. Molecular Breeding 2: 219224.
  • Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ. 2006. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442: 705708.
  • Yamamuro C, Ihara Y, Wu X, Noguchi T, Fujioka S, Takatsuto S, Ashikari M, Kitano H, Matsuoka M. 2000. Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint. Plant Cell 12: 15911606.
  • Yang DL, Yao J, Mei CS, Tong XH, Zeng LJ, Li Q, Xiao LT, Sun TP, Li J, Deng XW et al. 2012. Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade. Proceedings of the National Academy of Sciences, USA 109: E1192E1200.
  • Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. 2005. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120: 249259.
  • Yokota T, Takahashi N. 1986. Chemistry, physiology and agricultural application of brassinolide and related steroids. In: Boop M, ed. Plant growth substances. Berlin, Germany: Springer, 129138.
  • Yoshimitsu Y, Tanaka K, Fukuda W, Asami T, Yoshida S, Hayashi K, Kamiya Y, Jikumaru Y, Shigeta T, Nakamura Y et al. 2011. Transcription of DWARF4 plays a crucial role in auxin-regulated root elongation in addition to brassinosteroid homeostasis in Arabidopsis thaliana. PLoS ONE 6: e23851.
  • Zimmermann P, Laule O, Schmitz J, Hruz T, Bleuler S, Gruissem W. 2008. Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases. Molecular Plant 1: 851857.