The exocyst is a protein complex that is essential for polarized secretion in mammals and fungi. Although the exocyst is essential for plant development, its precise function has not been elucidated. We studied the role of exocyst subunit SEC3A in plant development and its subcellular localization.
T-DNA insertional mutants were identified and complemented with a SEC3A-green fluorescent protein (GFP) fusion construct. SEC3A-GFP localization was determined using confocal microscopy.
sec3a mutants are defective in the globular to heart stage transition in embryogenesis. SEC3A-GFP has similar cell plate localization to the other plant exocyst subunits. In interphase cells, SEC3A-GFP localizes to the cytoplasm and to the plasma membrane, where it forms immobile, punctate structures with discrete lifetimes of 2–40 s. These puncta are equally distributed over the cell surface of root epidermal cells and tip growing root hairs. The density of puncta does not decrease after growth termination of these cells, but decreases strongly when exocytosis is inhibited by treatment with brefeldin A.
SEC3A does not appear to be involved in polarized secretion for cell expansion in tip growing root hairs. The landmark function performed by SEC3 in mammals and yeast is likely to be conserved in plants.
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Exocytosis is a fundamental process for cells of all eukaryotic organisms. It is required for the secretion of extracellular materials and for the enlargement of the plasma membrane. In plant cells, exocytosis is also crucial for cell wall formation and cell elongation, which are coupled processes. Vesicle fusion for anisotropic plant cell elongation occurs in a non-random pattern, which implies that the sites of exocytosis must be temporally and spatially controlled. This could occur through directed Golgi body transport by the actin cytoskeleton and the targeting of Golgi vesicles to specific sites of the plasma membrane and/or by tethering and docking of the vesicles to a specific membrane domain before exocytosis. In yeast, the exocyst is involved in vesicle tethering before exocytotic vesicle membrane fusion with the plasma membrane. As almost all plant cells expand in a polar fashion, by either axial or tip growth, a local tethering complex could be important for the determination of the orientation of cell expansion.
In budding yeast, bud growth requires polarized exocytosis. An octameric protein complex, termed the exocyst, has been identified that serves as a tethering factor for exocytotic vesicles in the bud tip (TerBush et al., 1996). Polarized localization of the exocyst is essential for polarized secretion during bud formation (Hsu et al., 2004; Munson & Novick, 2006; Zhang et al., 2008; Songer & Munson, 2009).
The exocyst consists of SEC3, SEC5, SEC6, SEC8, SEC10, SEC15, EXO70 and EXO84 (Hsu et al., 1996; Kee et al., 1997; Eliás et al., 2003; Li et al., 2010; Zhang et al., 2010). Budding yeast SEC3 is considered to be a landmark protein for polarized exocytosis, as it is localized to the plasma membrane at which exocytosis will occur and is involved in the recruitment of the other exocyst subunits that reside in the cytoplasm or are associated with vesicles at this location (Finger et al., 1998; Wiederkehr et al., 2003; Hutagalung et al., 2009). It is thought that the polarized localization of SEC3 is mediated by interactions with phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2) in the inner leaflet of the plasma membrane (He et al., 2007; Liu et al., 2007; Zhang et al., 2008) and with Rho family GTPases (He & Guo, 2009). The actin cytoskeleton that is essential for the delivery of the vesicle-associated subunits is not involved in the positioning of SEC3 (Finger et al., 1998; Wiederkehr et al., 2003; Hutagalung et al., 2009).
Relative to budding yeast, the role of the exocyst in plant cells remains unclear, although it could serve as a key component for the regulation of polarized exocytosis during cell expansion. All exocyst subunits are conserved in plants, and a plant-specific amplification of EXO70 genes has occurred during evolution, resulting in 23 EXO70 genes in Arabidopsis and 39 in rice (Eliás et al., 2003; Synek et al., 2006; Li et al., 2010). The expression patterns of these EXO70 genes are different, but they are all expressed in cells that are actively dividing or expanding (Li et al., 2010), supporting the idea that the exocyst is involved in the regulation of polarized exocytosis in plant cells.
Mutations in plant exocyst subunits that are encoded by one or two genes (SEC5, SEC6, SEC8, SEC15) cause defects in pollen germination and tube growth (Cole et al., 2005; Synek et al., 2006; Hála et al., 2008), suggesting an important function of the exocyst during plant cell tip growth. Mutations in the exocyst subunits that are encoded by more than two copies of genes (EXO84 (three genes) and EXO70 (23 genes)) cause growth defects of different degrees (Synek et al., 2006; Samuel et al., 2009; Fendrych et al., 2010; Kulich et al., 2010; Pecenková et al., 2011). Plant homologues of SEC3 have only been studied in maize. A mutation in the SEC3 encoding gene ROOTHAIRLESS1 results in the failure of correct root hair elongation (Wen et al., 2005). However, the expression patterns of maize SEC3 genes are not known, which makes it difficult to interpret this result. In Arabidopsis, SEC3 is encoded by two nearly identical genes in a tandem arrangement (Eliás et al., 2003). This has hampered the genetic analysis of SEC3 function in Arabidopsis. Interestingly, in Arabidopsis, the ICR1 (interactor of constitutive active ROP1) adaptor protein interacts with SEC3, which provides a putative link to activated ROP (Rho of plants) GTPases (Lavy et al., 2007). As ROP GTPases serve as intracellular polarity markers (Yang, 2008), this link suggests that exocyst recruitment could be (partially) ROP mediated.
Hála et al. (2008) have shown by immunocytochemistry that SEC6, SEC8 and EXO70A1 are enriched in the apex of growing tobacco pollen tubes, which is consistent with a role in polarized exocytosis. In tobacco Bright Yellow 2 (BY-2) suspension cultured cells, transient expression of Arabidopsis SEC5A, SEC15A, SEC15B and EXO84B fused to green fluorescent protein (GFP) resulted in fluorescent, globular structures in the perinuclear cytosol (Chong et al., 2010), whereas immunofluorescence revealed that the intracellular localization of EXO70 proteins differs depending on the isoform; they show either a cytoplasmic organization or localize to smaller or larger compartments with different degrees of co-localization with snares specific for early endosomes, late endosomes and the trans Golgi network (Chong et al., 2010; Wang et al., 2010). Distinct structures were also observed by Samuel et al. (2009) in stigma cells expressing red fluorescent protein (RFP):EXO70A1. On opening of the flowers, the RFP:EXO70A1 fluorescence relocated to the cell cortex, suggesting that EXO70A1 localization depends on the developmental stage. During cytokinesis, the Arabidopsis exocyst subunits SEC6, SEC8, SEC15B, EXO70A1 and EXO84B localize to the early cell plate, whereafter their localization on the cell plate disappears (Fendrych et al., 2010). Exocyst subunits reappear on the division wall for a short period after completion of cytokinesis (Fendrych et al., 2010).
Recent research has revealed that the exocyst subunits EXO84B, EXO70A1, SEC6 and SEC8 form distinct foci at the plasma membrane, with lifetimes ranging from 9.3 (EXO70A1) to 13.3 s (Fendrych et al., 2013). Co-localization studies have revealed that both EXO84B and SEC6 are present in 37% of these foci (Fendrych et al., 2013). As this study was carried out by variable-angle epifluorescence microscopy, only the plasma membrane localization was studied, and it was not investigated whether these exocyst subunits also localize to vesicles. Wang et al. (2010) showed that EXO70E2 localizes to discrete punctate structures at the plasma membrane and in the cytosol of Arabidopsis cells and tobacco BY-2 suspension cultured cells. The compartments at the plasma membrane are contained by two membranes, both of which are EXO70E2 decorated, and secretory. On secretion, the inner membrane is expelled into the apoplast. These organelles, which do not co-localize with any known organelle, have been named EXPO (exocyst-positive organelles; Wang et al., 2010). For a better understanding of the localization of different exocyst subunits and their assembly into multicomponent complexes, additional work is needed.
Here, we report the characterization of the SEC3A gene in Arabidopsis. Disruption of the SEC3A gene is embryo lethal, with defects in the acquisition of embryo polarity. During cytokinesis, SEC3A-GFP localizes to the early cell plate and to the completed division wall, respectively, similar to other exocyst subunits (Fendrych et al., 2010). In interphase cells, SEC3A-GFP localizes to the cytoplasm and to the plasma membrane, where it forms immobile, punctate structures with discrete lifetimes. In tip growing root hairs, the puncta localize over the whole cell surface, and the amount of puncta does not decrease strongly in fully grown cells. Inhibition of exocytosis causes a strong reduction in the density of the puncta. As the density of SEC3A-GFP puncta does not depend on (the location of) cell expansion, this indicates that SEC3A mediates a type of exocytosis not related to cell growth. Our data show that the polar localization of SEC3A-GFP in the cell cortex occurs only during and just after cytokinesis, and that SEC3A-GFP puncta are evenly spread throughout the cell cortex in interphase cells.
Materials and Methods
Plant material, plant transformation and growth
All Arabidopsis thaliana (L.) Heynh. lines used had a Col-0 background. Plants were grown in a growth room at 22°C with a 16-h light and 8-h dark photoperiod. Arabidopsis transformation was performed by floral dipping as described by Clough & Bent (1998). Seeds were surface sterilized as described by Ketelaar et al. (2004), followed by stratification at 4°C for 2 d. Seeds were grown on plates containing half-strength Murashige and Skoog (MS) salts (Duchefa, Haarlem, the Netherlands) and 0.7% Phyto agar (Duchefa), pH 5.7, or in biofoil slides, as described by Ketelaar et al. (2004), for fluorescence microscopy, with the exception that we used 0.16% (w/v) Hoagland's medium (Sigma-Aldrich, Zwijndrecht, the Netherlands), supplemented with 1% sucrose (Duchefa) and 0.7% Phyto agar (Duchefa), pH 5.7.
Yeast two-hybrid assay
The cDNAs of Arabidopsis SEC3A, SEC5A, SEC6, SEC8, SEC10, SEC15A, SEC15B, EXO70A1, EXO70H5, EXO70H7, EXO84B and EXO84C were amplified by PCR (the primer sequences are given in Supporting Information Table S1) and cloned into the pCR8/GW/TOPO vector (Invitrogen). The coding sequence of each protein in the entry clone was confirmed by sequencing and transferred into the Gateway destination vectors pDEST32 (pBDGAL4, bait) and pDEST22 (pADGAL4, prey; Invitrogen). As a result of technical problems, SEC15A, EXO70H5 and EXO84B could not be cloned into the pDEST32 vector and SEC10 could not be cloned into the pDEST22 vector. All the constructed bait vectors were transformed into the yeast strain PJ69-4α (MATa; James et al., 1996) and transformants were selected on SD (synthetic drop-out) plates lacking leucine (Leu). All the constructed prey vectors were transformed into yeast strain PJ69-4a (MATα; James et al., 1996) and the transformants were selected on SD plates lacking tryptophan (Trp). Subsequently, all the baits were tested for self-activation of the yeast reporter genes, and the basal expression level of the HIS3 reporter gene was determined by titrating histidine (HIS) activity with 3-amino-1,2,4-triazole (3-AT). The addition of 10 mM 3-AT inhibited the growth of yeast in the absence of HIS, except for SEC3A, SEC10 and EXO84C. Diploid yeasts containing both bait and prey were generated by mating the two yeast strains on SD plates, followed by selection on SD plates lacking Leu and Trp. Next, the diploid yeast strains were transferred to SD plates lacking Leu, Trp and adenine (Ade), and SD plates lacking Leu, Trp and HIS supplemented with 10 mM 3-AT, respectively. The β-galactosidase assay was performed as described by Duttweiler (1996).
Identification of the sec3a mutant
The T-DNA insertion line SALK_145185 was obtained from NASC (European Arabidopsis Stock Centre, http://arabidopsis.info/) and verified by PCR-based genotyping. Total genomic DNA was extracted as described by Edwards et al. (1991). The wild-type allele was amplified using gene-specific primers (Table S1) and the insert alleles were amplified using a gene-specific primer and the T-DNA left border primer LBa1 (5′-TGGTTCACGTAGTGGGCCATCG-3′) and right border primer JMRB1 (5′-GCTCATGATCAGATTGTCGTTTCCCGCCTT-3′). Examples of genotyping PCR results are given in Fig. S2.
β-Glucuronidase (GUS) fusion
A 7589-bp genomic DNA fragment containing 967 bp of sequence upstream from the start codon and the full-length genomic sequence of SEC3A was amplified by PCR using the primers 5′-CATGGAAGCCAGAAGTCCTCTCATTTC-3′ and 5′-AAAGCCGGGACTTAGCCATCC-3′. The amplified fragment was cloned into the pDONR207 vector (Invitrogen), followed by recombination into the Gateway binary vector pMDC162 (Curtis & Grossniklaus, 2003), and transformed into Arabidopsis by the floral dip method (Clough & Bent, 1998). GUS staining was performed as described by Fiers et al. (2004).
To determine the terminal phenotype of sec3a embryos, seeds were excised from siliques from heterozygous plants and cleared in Hoyer's solution, as described by Liu & Meinke (1998). The seeds were then mounted and observed for defects in embryogenesis under an Eclipse 80i microscope (Nikon, Amstelveen, the Netherlands) equipped with Nomarski optics. Alternatively, immature seeds were dissected from siliques and fixed overnight in 4% paraformaldehyde and 0.25% glutaraldehyde in 50 mM sodium phosphate buffer, pH 7.2, rinsed three times in the same buffer, dehydrated in a graded ethanol series (10%, 30%, 50%, 70%, 90%, 100%) and embedded into Technovit 7100 (Heraeus Kulzer GmbH, Wehrheim, Germany) according to the manufacturer's instructions. Three-micrometer-thick sections were cut with a rotation microtome (HM 340; Microm GmbH, Walldorf, Germany) and stained in 0.05% toluidine blue. For the investigation of tissue organization of mutant embryos, immature seeds were placed in 0.002% w/v Calcofluor White in water between a microscope slide and coverslip, and gently squashed until the embryos popped out of the immature seeds.
A 7989-bp fragment encompassing the SEC3A genomic DNA, including 967 bp of upstream sequence and 397 bp of downstream sequence, was amplified by PCR using the primers 5′-GGGGACAAGTTTGTACAAAAAAGCAGGCTCACTCGGAGTTAATATGTATGCGC-3′ and 5′-GGGGACCACTTTGTACAAGAAAGCTGGGT5AAAGCCGGGACTTAGCCATCC-3′. The amplified fragment was recombined into the vector pDONR207 (Invitrogen), followed by recombination into the Gateway binary vector pMDC99 (Curtis & Grossniklaus, 2003). The transformed plants harboring the SEC3A gene were selected on 20 μg ml−1 hygromycin-containing plates.
Construction of GFP fusion gene construct
The entry clone was recombined into the Gateway binary vector pMDC107 (Curtis & Grossniklaus, 2003). The selection and complementation analysis of transformants were conducted as described above (section on 'Genetic complementation').
SEC3A-GFP fluorescence and Calcofluor White-stained embryos were imaged using a Nikon Eclipse Ti inverted microscope connected to a Roper Scientific spinning disk system, consisting of a CSU-X1 spinning disk head (Yokogawa, Tokyo, Japan), QuantEM:512SC CCD camera (Roper Scientific, Evry, France) and a ×1.2 magnifying lens between the spinning disk head and the camera. GFP was excited using a 491-nm laser line and Calcofluor White using a 405-nm laser line.
Photobleaching was performed using the FRAP/PA system (Roper Scientific) fed into the spinning disk microscope. The 491-nm laser line was used at 100% intensity (10 ms per scan point of four pixels in diameter) to photobleach GFP.
All imaging processing was performed using Image J software (http://rsb.info.nih.gov/ij/). Figures were composed in Photoshop CS2 (Adobe, San Jose, CA, USA). Puncta were defined as high-intensity (> 80 gray levels above the background level in eight-bit, contrast-stretched images), immobile, circular structures with a Gaussian distribution around the pixel, with the peak intensity ranging in size between 4 and 20 pixels. For measurements of SEC3A-GFP intensity in median planes of root hairs, we defined the root hair tube as the tubular part of the root hair with a constant width. We measured the intensity of the area 5–10 μm from the base of the dome. The tip is defined as the top of the dome; we measured the intensities of a 3-μm-long membrane stretch centered around the top of the dome. For intensity measurements at the side of the dome, we measured a 3-μm-long membrane stretch centered around the center point between the top and the base of the dome.
FM4-64 staining and drug treatments
FM4-64 (final concentration, 17 μM) and brefeldin A (BFA) stock solutions were prepared in dimethylsulfoxide (DMSO). Drug treatments were performed by submerging biofoil slides into drug-containing medium for 20 min. Negative controls were treated with the same concentrations of DMSO as the drug-treated samples.
Interactions between the subunits of the exocyst complex in Arabidopsis
To gain an insight into the assembly and structure of the plant exocyst, we determined the interactions between different exocyst subunits using a matrix-based yeast two-hybrid assay. Interactions between the exocyst subunits SEC3A, SEC5A, SEC6, SEC8, SEC10, SEC15A, SEC15B, EXO70H7, EXO70A1, EXO84B and EXO84C were determined. In the self-activation assessment of the baits, SEC3A, SEC10 and EXO84C showed very strong self-activation; therefore, they could not be used as baits in the interaction test. Six pairs of strong interactions were detected for which all three reporter genes were activated: SEC3A interacts with EXO70 A1 and SEC5A, SEC15B interacts with both EXO84B and EXO84C, EXO70A1 interacts with EXO84C, and EXO70H7 interacts with EXO84B (Table 1; Fig. S1). The LacZ reporter gene was activated for two pairs only: SEC5A with SEC6 and SEC5A with EXO84C; hence, these putative weak interactions need to be confirmed by alternative methods. We decided to focus on SEC3, because of its prominent role in the yeast exocyst complex.
Table 1. Interactions between exocyst subunits in Arabidopsis as determined by yeast two-hybrid assays
The Arabidopsis Genome Initiative numbers for the listed genes are At1 g47550 (SEC3A), At1 g76850 (SEC5A), At1 g71820 (SEC6), At3 g10380 (SEC8), At5 g12370 (SEC10), At3 g56640 (SEC15A), At4 g02350 (SEC15B), At2 g28640 (EXO70H5), At5 g59730 (EXO70H7), At5 g03540 (EXO70A1), At5 g49830 (EXO84B) and At1 g10180 (EXO84C).
EXO84C (LacZ only)
SEC6 (LacZ only)
SEC3A expresses in multiple tissues, most of which contain dividing and expanding cells
Arabidopsis possesses two genes that encode SEC3, SEC3A (At1 g47550) and SEC3B (At1 g47560), which are tandemly duplicated and share 97% sequence identity at the protein level. The ATH1 whole-genome chip is unable to discriminate between SEC3A and SEC3B expression. However, expressed sequence tags (ESTs) and a search against the Arabidopsis MPSS database revealed that both genes are expressed (Chong et al., 2010). We determined the temporal and spatial expression pattern of SEC3A by expression of a SEC3A genomic-GUS gene fusion. Six independent transgenic plants expressing the SEC3A genomic sequence fused to GUS were examined histologically for GUS activity. In light-grown seedlings, SEC3A was expressed in cotyledons and root, but not in hypocotyls, and highly expressed in shoot apical meristems (Fig. 1a). In roots, SEC3A was highly expressed in the root tip, the vasculature (Fig. 1b) and lateral root primordia (Fig. 1b). Unlike in younger seedlings, SEC3A expression was observed in the hypocotyls of older seedlings (Fig. 1d). In both expanding and expanded rosette leaves, SEC3A expression was detected (Fig. 1e). In flowers, SEC3A expression was not detected in petals and sepals (Fig. 1f), but strong SEC3A expression was detected in the stigma (Fig. 1g), unfertilized ovules (Fig. 1g) and pollen (Fig. 1h). In embryos, SEC3A expression was observed from the early heart stage onwards (Fig. 1i–k). Thus, SEC3A expresses in various tissues of both seedlings and mature plants and preferentially in tissues containing dividing and expanding cells, such as the shoot apical meristem, root tip, lateral root primordia and developing embryos.
Identification of an embryo-lethal sec3a mutant
Using a PCR-based genotyping approach, we identified a SALK line (SALK_145185) harboring a T-DNA insertion in the first intron of the SEC3A (At1 g47550) gene (Fig. 2a). We performed PCR amplification of the SEC3A wild-type allele with primers flanking the T-DNA insertions and amplification of the mutant sec3a allele left and right borders with one primer flanking the T-DNA insertion and the T-DNA left-border primer LBa1 and one primer flanking the T-DNA insertion and the R-DNA right-border primer JMRB1. All PCRs resulted in amplification products of the expected size, indicating that the T-DNA insertion caused no DNA rearrangements. We identified only heterozygous and wild-type plants (Fig. S2). The sec3a allele segregated in a ratio of 1 : 2 in progeny of selfed heterozygous plants (30.0% wild-type : 70.0% heterozygous; n = 350 plants (Table 2)). As no homozygous plants were identified and the 1 : 2 segregation ratio of the sec3a allele is typical for embryo lethality, we tested immature siliques from heterozygous sec3a plants for the presence of white or otherwise abnormal seeds. Green and white seeds within single siliques were observed, whereas only green seeds were present in the immature siliques from wild-type plants (Fig. 2b). As white seeds indicate embryo lethality (Meinke & Sussex, 1979), we scored the number of white seeds from 10 siliques from three individual plants heterozygous for sec3a. In all these lines, c. 25% of seeds were white, suggesting that the sec3a mutation is recessively embryo lethal (Fig. 2c). The mature seeds from heterozygous and wild-type plants were also compared, showing a mixture of dark-brown, small, wrinkled seeds and normal light-brown seeds in heterozygous plants and only normal light-brown seeds in the wild-type (Fig. 2d). We tested germination by placing wrinkled seeds and normal seeds on half-strength MS plates to score the germination rate. The normal seeds all germinated, but none of the wrinkled seeds had germinated after 1 wk (n = 300; Fig. 2e). To determine whether, in addition to embryo lethality, the sec3a mutation causes gametophytic defects, we analyzed the progeny of heterozygous SEC3A/sec3a lines and performed reciprocal crosses between SEC3A/sec3a and wild-type plants. In the progeny of SEC3A/sec3a, the sec3a allele segregated as expected (Table 2). In the progeny of the reciprocal crosses, the transmission of the sec3a allele was not affected when SEC3A/sec3a was used as either pollen donor or pollen receiver (Table 2), demonstrating that gametophytic transmission of the sec3a allele is normal. Thus, SEC3A appears to be essential for plant development.
Table 2. Inheritance of the Arabidopsis sec3a allele as determined by reciprocal crosses
Natural self of SEC3A heterozygous
Number of progeny
Expected ratio (wild-type : heterozygous)
P values were determined using the χ2 test. P >0.05 is different from the expected ratio.
Embryo development in sec3a is arrested at the globular stage
To examine whether the white seeds in the progeny of plants heterozygous for sec3a were harboring aborted embryos, we investigated embryo development in these seeds. From the two-cell stage to the 32-cell stage, we could not discriminate between mutant and wild-type embryos. Unlike normally developing embryos, which become heart shaped 4 d after fertilization (Fig. 3a,b), the mutant embryos failed to undergo this developmental step (Fig. 3e,f). Mutant embryos from siliques in which the wild-type embryos had developed to the cotyledonary stage (Fig. 3c,d) were still globular, although their size and the number of cells had increased beyond the normal size and number of cells of globular embryos, and the cells of the mutant embryo appeared more rounded (Fig. 3g,h). To investigate the defects in mutant embryos in more detail, we stained the cell walls with Calcofluor White. Microscopic analysis revealed several aspects: although the suspensor looked normal, the mutant embryo proper lacked any polarity, cells were rounded and cell division occurred in random directions, whereas, in heart-shaped wild-type embryos of the same age, an epidermal cell layer had clearly developed (Fig. 4). Thus, although cell division is not inhibited, aberrant embryos apparently lack any form of differentiation and polarity.
The sec3a mutant phenotype is rescued by genetic complementation
Genetic complementation of the sec3a mutant was performed by introducing the full-length SEC3A genomic DNA, driven by the endogenous SEC3A promoter (ProSEC3A:SEC3A), into plants heterozygous for sec3a. In addition, we introduced a similar construct with the GFP coding region fused to the 5′ end of the SEC3A genomic sequence (ProSEC3A:SEC3A-GFP). We scored for white seeds in two T1 lines carrying the ProSEC3A:SEC3A construct to assess the percentage of seeds in which embryo development was arrested. In contrast with uncomplemented T1 plants that carried c. 25% white seeds, both lines had a strongly reduced number of abnormal (white) seeds (2.18% (n = 1008 seeds from 14 siliques) and 1.55% (n = 645 seeds from 10 siliques), respectively). Transgenic T1 plants heterozygous for the sec3a allele complemented with the ProSEC3A:SEC3A-GFP construct showed percentages of white seeds below 2% (n = 7 independent transformants). The percentages of white seeds observed were lower than that expected in T1 plants carrying one complementation construct (6.25%), indicating that the T1 plants carry more than one complementation construct. Indeed, backcrossing of these lines with the Col-0 wild-type resulted in progeny with higher percentages of white seeds in five of the seven independent lines and, after backcrossing to Col-0 twice, followed by selfing, we were able to select four lines that showed c. 6.25% of white seeds of lines complemented with ProSEC3A:SEC3A and ProSEC3A:SEC3A-GFP. Approximately 75% of the seedlings of these backcrossed lines carried the hygromycin resistance marker of the complementation construct. Both the complemented T1 and the backcrossed lines developed normally and contained normally developed embryos, demonstrating that the mutant phenotype is caused by the sec3a T-DNA insertion allele and that both ProSEC3A:SEC3A and ProSEC3A:SEC3A-GFP fully complement the mutant phenotype.
SEC3A tagged with GFP (SEC3A-GFP) is present in the cytosol and accumulates in puncta at the plasma membrane
We determined the subcellular localization of SEC3A in transgenic T2 plants carrying the SEC3A-GFP fusion construct, selected as described above, in developing embryos, root hairs and root epidermal cells. Root hairs expand by tip growth; their expansion is extremely polarized and occurs exclusively at the tip. Root epidermal cell expansion is also polar, but occurs over the whole cell facets parallel to the elongation direction of the root. We refer to this type of cell expansion as axial growth (also called intercalary or diffuse growth; for a review, see Ketelaar & Emons, 2001). We studied SEC3A-GFP localization in both expanding and fully grown cells.
In the embryos, SEC3A-GFP accumulated at the periphery of the cells and stained the cytoplasm weakly (Fig. 5). In addition to the SEC3A-GFP fluorescence, amyloplasts produced autofluorescence. This fluorescence was also present in wild-type embryos (Fig. 5a,c). Because we observed plasmolysis and relocation of the SEC3A-GFP signal within 5 min after embryo isolation, we shifted our focus to root hairs and root epidermal cells that are more suitable for live cell imaging. In both of these cell types, we observed SEC3A-GFP fluorescence evenly distributed throughout the cytoplasm and brightly fluorescent cell compartments, which are clearly visible in Fig. 5(i). At the plasma membrane of both cell types, SEC3A-GFP fluorescence had a punctate distribution (Fig. 5e,h), similar to that observed for the other exocyst subunits SEC6, SEC8, EXO70A1 and EXO84b (Fendrych et al., 2013). We did not observe clear differences in the density of the puncta in expanding and fully grown cells (Fig. 5j). As the tip of growing root hairs harbors many vesicles and is the location of cell elongation, it was important to determine the density of SEC3A puncta at this location. As it is technically challenging to measure the density of puncta in the surface of the dome of the root hair tip, because of its curvature, we measured the fluorescence intensities of membrane regions in median confocal sections (Fig. 5i). Cell expansion is fastest at the side of the dome and is slower at the tip of the dome (Shaw et al., 2000). We measured the fluorescence intensities in the plasma membrane of these two areas and compared these intensities with the fluorescence intensity of the plasma membrane of the tube (Fig. 5k). Surprisingly, we did not observe significant differences in fluorescence intensity between the different membrane areas of the expanding tip and the membrane area of the non-expanding root hair tube (P =0.40 between the tube and the side of the dome, and P =0.11 between the tube and the tip; ANOVA with paired samples). Thus, SEC3A puncta at the plasma membrane do not preferentially accumulate in expanding areas of cells. This suggests that SEC3A is not specifically recruited to polar exocytosis events in interphase cells.
SEC3A-GFP forms discrete, immobile puncta with a lifetime of seconds at the plasma membrane
To determine the behavior over time of the SEC3A-GFP puncta at the plasma membrane, we photobleached the SEC3A-GFP that was already present and analyzed the recovery of fluorescence over time. We studied the behavior of individual SEC3A-GFP puncta at the plasma membrane of tubes of growing (Fig. 6a) and fully grown (Fig 6b) root hairs, and the plasma membrane of the outer periclinal face of expanding (Fig. 6c; Movie S1) and fully grown (Fig. 6d; Movie S2) root epidermal cells. In all of these cell types, new, immobile fluorescent SEC3A-GFP puncta appeared at the plasma membrane after photobleaching. When puncta first appeared, their fluorescence was low but detectable. Over time, their fluorescence intensity increased until it reached a maximum intensity, whereafter the fluorescence intensity gradually decreased until it disappeared completely (Fig. 6e). The characteristic behavior of SEC3A-GFP puncta is illustrated in Fig. 6(f).
To check whether there are differences in the lifetime of the puncta between different cell types and/or between growing and fully grown cells, we measured the lifetimes of the SEC3A-GFP puncta in growing and fully grown root epidermal cells and root hair tubes (Fig. 6g). We collected image sequences with 2-s intervals between sequential images, determined the amount of frames during which each punctum was present and used these values to calculate an average lifetime. Within individual cells, lifetimes were highly variable, ranging from 2 to 40 s. The average lifetime of SEC3A-GFP puncta was 6.3 ± 2.7 s in the tube region of growing root hairs (n = 81 from three cells), 6.6 ± 3.4 s in the tube region of fully grown root hairs (n = 113 from five cells), 6.7 ± 3.6 s in expanding root epidermal cells (n = 86 from four cells) and 12.6 ± 8.3 s in fully grown root epidermal cells (n = 127 from five cells). The average SEC3A-GFP punctum lifetime in the growing root hairs was no different from that in fully grown root hairs (P = 0.49). The lifetime of puncta in expanding and expanded root epidermal cells is significantly different (P = 0.001), which can be accounted for by the small population (10.2%) of puncta with long lifetimes (> 24 s) in fully expanded root epidermal cells (Fig. 6g).
SEC3A-GFP is not delivered to the plasma membrane by the Golgi system
To test whether SEC3A is delivered to the plasma membrane by the Golgi system, we tested whether it associates with the vesicle pool in the apex of expanding root hairs by staining with the amphiphilic styryl dye FM4-64. It is assumed that FM4-64 decorates membranes of endocytotic vesicles rapidly and also that exocytotic vesicles are decorated rapidly (van Gisbergen et al., 2008; Griffing, 2008). We did not see any SEC3A accumulation in the vesicle-rich region in the apex of growing root hairs other than the fluorescence that is present throughout the cytoplasm (Fig. 7). From this, we conclude that SEC3A-GFP does not localize to FM4-64-labeled vesicles. This suggests that SEC3A recruitment to the plasma membrane is not mediated by the Golgi system.
To investigate whether SEC3A recruitment to the plasma membrane depends on exocytosis, we applied BFA to growing root hairs and measured the density and lifetime of SEC3A-GFP puncta at the plasma membrane. BFA is a macrocyclic lactone of fungal origin that inhibits Golgi-based secretion in plants (reviewed in Robinson et al., 2008). We applied a concentration range of BFA to growing root hairs. The lowest concentration of BFA that caused complete root hair growth inhibition after 2 h was 5 μg ml−1. Occasionally, swollen root hair tips were observed, but root hairs were still alive and cytoplasmic streaming continued. The inhibition of root hair growth showed that treatment with 5 μg ml−1 BFA successfully inhibits Golgi-based secretion in root hairs. Under these conditions, SEC3A-GFP still localized as puncta to the plasma membrane throughout the root hair tube. However, the density of the SEC3A-GFP puncta was reduced dramatically after 2 h of treatment compared with that in untreated cells (0.23 ± 0.05 μm−2 compared with 0.58 ± 0.67 μm−2 before treatment; P < 0.001; Fig. 8a). After 4 h of BFA treatment, the density had decreased even further (0.09 ± 0.04 μm−2; Fig. 8a). The SEC3A-GFP puncta still showed their characteristic increase and decrease in fluorescence intensity during their lifetime, but the average lifetime was increased when compared with control cells (10.0 ± 4.3 s in BFA-treated cells (2 h) and 6.3 ± 2.7 s in control cells; P < 0.001; Fig. 8b). The lifetime of SEC3A-GFP puncta did not change after longer BFA treatment (10.1 ± 5.1 s after 4 h (P = 0.93); Fig. 8b). Thus, the disruption of exocytotic vesicle production causes a decrease in recruitment and longer lifetimes of SEC3A-GFP puncta.
SEC3A-GFP puncta do not co-localize with cortical microtubules and the insertion of cellulose synthase (CESA) complexes into the plasma membrane
As the insertion of CESA complexes into the plasma membrane, which is likely to be an exocytotic event, occurs predominantly along cortical microtubules, we tested whether SEC3A-GFP puncta co-localized with these cortical microtubules. We crossed an mCherry-TUA5-expressing line (Gutierrez et al., 2009) with SEC3A-GFP-expressing lines. The optical coverage of cortical microtubules in the analyzed cells was 30.3 ± 0.9% (n = 3 cells; Fig. 9a). If the SEC3A-GFP puncta appear at random locations of the cell cortex, the expected percentage of puncta co-localizing with cortical microtubules is c. 30%. Thirty-eight of 125 SEC3A-GFP puncta showed co-localization with cortical microtubules, which is 28.9% (Fig. 9a; Movie S3). This is not significantly different from the expected percentage (P = 0.59). To test the co-localization of SEC3A-GFP with CESA complexes directly, we crossed a tdTomato-CESA6-expressing line (Gutierrez et al., 2009) into a SEC3A-GFP-expressing line and searched for the co-localization of SEC3A-GFP with the insertion of CESA complexes. This was performed by the photobleaching of existing tdTomato-CESA6 in the plasma membrane. We performed a co-localization analysis of newly inserted tdTomato-CESA6 with SEC3A-GFP puncta during the insertion process (both the erratic movement and static phase, as described by Gutierrez et al., 2009), and found that only 2% of the CESA complex insertion events correlated with the presence of a SEC3A punctum at the same location (n = 100 insertion events in five cells; Fig. 9b; Movie S4). Thus, it is unlikely that SEC3A puncta are involved in exocytosis for the insertion of CESA complexes into the plasma membrane.
SEC3A-GFP transiently localizes to the early cell plate, is absent during cell plate extension and re-appears at the division wall
In mitotic cells, the exocyst subunits SEC6, SEC8, SEC15B, EXO70A1 and EXO84B are localized to the initiating cell plate, disappear during cell plate extension and reappear on the division wall for some time after the completion of cytokinesis (Fendrych et al., 2010). To determine whether SEC3A behaves similarly, we studied the localization of SEC3A-GFP during the course of cell plate formation in dividing cells of the Arabidopsis root meristem. In the meristematic cells in both the epidermal and cortical cell layer, SEC3A-GFP is localized to distinct structures with high fluorescence intensity in some cells (Fig. 10a). To gain an insight into the SEC3A-GFP localization, we counterstained with FM4-64, which labels developing cell plates (Dhonukshe et al., 2006), and followed the SEC3A localization in cells of the root meristem over time. An accumulation of SEC3A-GFP fluorescence was associated with the appearance of the cell plate. During the centrifugal expansion of the cell plate to the parental cell walls, the SEC3A-GFP fluorescence disappeared (Fig. 10b). SEC3A-GFP accumulation during early cell plate formation lasted 173 ± 15 s (n = 5 cells). When cell plate formation had completed, SEC3A-GFP fluorescence started to accumulate at the division wall (Fig. 10c). The average residence time of SEC3A-GFP at the division wall was 27 ± 5 min (n = 15 cells from three independent root meristems). Thus, SEC3A localization during cytokinesis is similar to the localization of other exocyst subunits.
Our results can help to decipher the role of the exocyst in general and, in particular, of SEC3A in plant development. In interphase cells, SEC3A-GFP has a cytoplasmic localization and accumulates as immobile puncta at the plasma membrane with average lifetimes of 6.3–12.6 s depending on the cell type. Although SEC3A may be involved in exocytosis, it is not involved in the insertion of CESAs into the plasma membrane, and the density of SECA-GFP puncta does not depend on (polar) cell growth in interphase cells. SEC3A-GFP localizes to the cell plate during cytokinesis, but the lack of polarity in embryos of sec3a mutants suggests that SEC3A performs a function beyond the formation and/or correct positioning of cell plates in obtaining polarity during embryo development.
Interactions between different Arabidopsis exocyst subunits have been identified using different techniques. Hála et al. (2008) used chromatographic fractionation and yeast two-hybrid assays, whereas Pecenková et al. (2011) used yeast two-hybrid assays and fluorescence resonance energy transfer (FRET) analysis between several subunits. Together, these results strongly suggest that exocyst composition, and probably also function, is conserved in plants. Although co-fractionation shows that different exocyst subunits are in the same complex in plants (SEC3, SEC5, SEC6, SEC8, SEC10, SEC15 and EXO70A1; Hála et al., 2008), the pairwise interactions found by the yeast two-hybrid assay provide additional insight into exocyst assembly. We have identified additional interactions between different exocyst subunits: SEC3A interacts with SEC5A, SEC15B interacts with EXO84C, EXO70A1 interacts with EXO84C, and EXO70H7 interacts with EXO84B. In addition, we determined two weak interactions in the yeast two-hybrid assay: SEC5A with SEC6, and SEC5A with EXO84C. Knowledge about interactions within the exocyst could aid in the deciphering of the exocyst structure.
SEC3A in cytokinesis
sec3a null mutants are embryonically lethal, which differs from defects in other exocyst subunit mutants that have been described (Cole et al., 2005; Synek et al., 2006; Samuel et al., 2009; Kulich et al., 2010; Pecenková et al., 2011). The successful transmission of the sec3a allele from the male and female gametophytes to the progeny allows us to study exocyst functioning in somatic development, which is not possible in exocyst mutants that are gametophytically lethal. The failure of the sec3a mutant embryo to develop from globular to heart shape shows that embryo polarization is not established correctly in the sec3a mutant. Although exocyst subunits localize to the cell plate (Fendrych et al., 2010; our results), the defective sec3a embryos show that cell plate formation is not disrupted. It is also unlikely that the exocyst plays a role in determining the orientation of cell divisions, as defects during embryo development only arise after the initial divisions that occur normally. Moreover, in the fass mutant, in which the orientation of cell division and cell expansion is disrupted, this does not interfere with embryonic pattern formation and cell polarity (Torres-Ruiz & Jürgens, 1994). The sec3a mutant phenotype resembles that of the gnom mutant, with the difference that embryo development in the sec3a mutant arrests earlier than in the gnom mutant (Mayer et al., 1991). As the complete lack of polarity in the gnom mutant is caused by defects in PIN cycling during polar auxin transport (Geldner et al., 2003), it is possible that SEC3A plays a role in polar auxin transport. As the non-lethal exocyst mutants, exo70A1 and sec8, display defects in PIN cycling (Drdová et al., 2013), SEC3A may function in PIN localization during embryo development. In addition, SEC3A interacts with ICR1, which could transduce ROP-mediated signaling to the exocyst (Lavy et al., 2007; Bloch et al., 2008); the exocyst could function as a ROP effector. ROP signaling has been implicated in many developmental processes, ranging from cell morphogenesis and differentiation to polar positioning of PIN proteins and the polarization of plant cell divisions (Yang & Fu, 2007; Humphries et al., 2011; Nagawa et al., 2012).
Localization and behavior of SEC3A-GFP puncta at the plasma membrane of interphase cells
SEC3A is cytoplasmic and localizes transiently to the plasma membrane in puncta, with an average lifetime varying from 6.3 to 12.6 s. There is no difference in the density of puncta between the growing root hair tip, the non-growing tube and the fully grown hair, and no difference between expanding and fully grown root epidermal cells. Thus, it is unlikely that SEC3A has a role in the exocytosis of cell wall matrix polysaccharides, unless the SEC3A-GFP puncta serve as an anchoring location for the remainder of the exocyst. In this case, although evenly spaced, SEC3A-GFP puncta in the plasma membrane may only mediate exocytotic events when interaction with the exocyst subunits on the exocytotic vesicle occurs. SEC3A could be compared with a door handle, always present, which requires an actor to open the door. This is unlikely as the other exocyst subunits, SEC6, SEC8, EXO70A1 and EXO84B, have a similar localization pattern (Fendrych et al., 2013). In addition, the non-polar localization of SEC3A differs from the situation in budding yeast, where SEC3 localizes to plasma membrane areas in which polarized exocytosis occurs, for example presumptive bud sites, the tips of budding cells and the mother–daughter cell neck during cytokinesis, where it plays a role in tethering secretory vesicles (Finger et al., 1998). In addition, in growing tobacco pollen tubes, Hála et al. (2008) showed the accumulation of SEC6, SEC8 and EXO70A1 in the apical region where expansion occurs. Unlike the polar localization of SEC3 in yeast and the polar localization of exocyst subunits in tip growing pollen tubes, SEC3A-GFP does not show polarized localization on the plasma membrane of polarly expanding plant cells.
EXO70E2 localizes to discrete punctate structures that are present both in association with the plasma membrane and in the cytosol. This is different from the localization of SEC3A-GFP which does not localize to punctate structures in the cytoplasm. The EXO70E2-containing compartments in the cytoplasm were termed EXPO, as they did not co-localize with any conventional organelle (Wang et al., 2010). Unlike EXO70E2, SEC3A-GFP only localizes to discrete puncta at the plasma membrane, and not in the cytoplasm. In budding yeast, SEC3A functions as a landmark protein at the plasma membrane, where most other exocyst subunits (SEC5, SEC6, SEC8, SEC10, SEC15 and EXO84) are recruited via attachment to exocytotic vesicles (Zhang et al., 2008; Hutagalung et al., 2009). Budding yeast EXO70 localizes to the plasma membrane but, unlike SEC3, its localization is dependent on the actin cytoskeleton (Hutagalung et al., 2009). This is consistent with the localization of EXO70A1 to the plasma membrane (Fendrych et al., 2013) and EXO70E2 to both EXPOs and plasma membrane puncta in plant cells.
Plasma membrane-localized SEC3A-GFP puncta have discrete lifetimes. The fluorescence intensity during the lifetime of a punctum can be divided into three phases: first, it gradually increases; it then remains constant for a short time span and, finally, it decreases gradually. This suggests the recruitment of multiple SEC3A proteins over time from the cytosol, followed by a gradual dissociation of SEC3A proteins in the final phase. The yeast exocyst is thought to consist of single or, at most, a few proteins per subunit (Munson & Novick, 2006). As the puncta in the plasma membrane of interphase cells are unlikely to represent single SEC3A-GFP proteins, our results show that the plant exocyst either consists of multiple SEC3A proteins or that multiple exocyst-mediated events occur in one punctum. The decrease in density of SEC3A-GFP puncta during BFA treatment suggests that the presence of SEC3A at the plasma membrane is dependent on the presence of Golgi-derived vesicles or vesicle-associated factors, for example other exocyst subunits. Interestingly, the lifetime of SEC3A-GFP puncta is shorter than that of the other exocyst subunits that display this localization. In comparable cell types, elongating root epidermal cells, the lifetime of SEC3A-GFP puncta (6.7 ± 3.6 s) is almost 3 s shorter than that of GFP-EXO70A1 (9.3 s) and almost 7 s shorter than that of GFP-SEC8 (13.3 s; Fendrych et al., 2013). The short SEC3A lifetime compared with that of other exocyst subunits suggests that it is unlikely that SEC3A is recruited to the plasma membrane before the other exocyst subunits, and draws its role as a landmark protein into question. To be conclusive, thorough co-localization studies between SEC3A and the other exocyst subunits should be performed.
As discussed above, the similar, uniform density and similar lifetimes of SEC3A-GFP puncta at the plasma membrane suggest that SEC3A mediates an exocytotic event that is not related to (polarized) cell expansion. The only type of exocytosis that occurs over the cell surface, which can currently be detected using fluorescence microscopy, is that of CESA into the plasma membrane (Crowell et al., 2009; Gutierrez et al., 2009). We did not find co-localization between SEC3A and CESA insertion into the plasma membrane. Therefore, SEC3A does not appear to be involved in the insertion of CESA, but may mediate exocytosis of the cell wall matrix via Golgi vesicles. However, we have not been able to show this directly and cannot exclude the possibility that SEC3A mediates exocytotic events not related to cell wall formation, for example the insertion of trans-membrane receptors or ion channels into the plasma membrane. Pecenková et al. (2011) have shown the involvement of Exo70B2 and Exo70H1 in plant defence against pathogens. The insertion of receptors into the plasma membrane by an exocytotic mechanism during pathogen defence could be mediated by the SEC3A-GFP puncta.
This work was supported by the Ministry of Science and Technology of China (SQ2012CC057223). Y.Z. was funded by Wageningen University Sandwich Fellowship P2310. T.K. thanks Viktor Zárský (Charles University, Prague, Czech Republic) for sharing unpublished data and great discussions.