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  • Abadie P, Roussel G, Dencausse B, Bonnet C, Bertocchi E, Louvet JM, Kremer A, Garnier-Géré P. 2012. Strength, diversity and plasticity of postmating reproductive barriers between two hybridizing oak species (Quercus robur L. and Quercus petraea (Matt) Liebl.). Journal of Evolutionary Biology 25: 157173.
  • Albrecht C, Asselin A, Piché Y, Lapeyrie F. 1994. Chitinase activities are induced in Eucalyptus globulus roots by ectomycorrizal or pathogenic fungi during early colonization. Physiologia Plantarum 91: 104110.
  • Anders S, Huber W. 2010. Differential expression analysis for sequence count data. Genome Biology 11: R06.
  • Babst BA, Ferrieri RA, Thorpe MR, Orians CM. 2008. Lymantria dispar herbivory induces rapid changes in carbon transport and partitioning in Populus nigra. Entomologia Experimentalis et Applicata 128: 117125.
  • Barreneche T, Bodenes C, Lexer C, Trontin JF, Fluch S, Streiff R, Plomion C, Roussel G, Steinkellner H, Burg K et al. 1998. A genetic linkage map of Quercus robur L. (pedunculate oak) based on RAPD, SCAR, microsatellite, minisatellite, isozyme and 5S rDNA markers. Theoretical and Applied Genetics 97: 10901103.
  • Blythe MJ, Kao D, Malla S, Rowsell J, Wilson R, Evans D, Jowett J, Hall A, Lemay V, Lam S et al. 2010. A dual platform approach to transcript discovery for the planarian Schmidtea mediterranea to establish RNA-Seq for stem cell and regeneration biology. PLoS ONE 5: e15617.
  • Brändle M, Brandl R. 2001. Species richness of insects and mites on trees: expanding Southwood. Journal of Animal Ecology 70: 491504.
  • Brüggemann N, Schnitzler JP. 2001. Influence of powdery mildew (Microsphaera alphitoides) on isoprene biosynthesis and emission of pedunculate oak (Quercus robur L.) leaves. Journal of Applied Botany-Angewandte Botanik 75: 9196.
  • Bruns TD, Shefferson RP. 2004. Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions. Canadian Journal of Botany-Revue Canadienne De Botanique 82: 11221132.
  • Chen LQ, Hou BH, Lalonde S, Takanaga H, Hartung ML, Qu XQ, Guo WJ, Kim JG, Underwood W, Chaudhuri B et al. 2010. Sugar transporters for intercellular exchange and nutrition of pathogens. Nature 468: 527532.
  • Duplessis S, Courty PE, Tagu D, Martin F. 2005. Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus. New Phytologist 165: 599611.
  • Edwards MC, Ayres PG. 1981. Cell death and cell wall papillae in the resistance of oak species to powdery mildew disease. New Phytologist 89: 411418.
  • Ellenberg H. 2010. Vegetation Mitteleuropas mit den Alpen: in ökologischer, dynamischer und historischer Sicht. Stuttgart, Germany: Ulmer.
  • Endlweber K, Ruess L, Scheu S. 2009. Collembola switch diet in presence of plant roots thereby functioning as herbivores. Soil Biology & Biochemistry 41: 11511154.
  • Epron D, Dreyer E. 1993. Long-term effects of drought on photosynthesis of adult oak trees Quercus petraea (Matt.) Liebl. and Quercus robur L. in a natural stand. New Phytologist 125: 381389.
  • Faivre-Rampant PF, Lesur I, Boussardon C, Bitton F, Martin-Magniette ML, Bodenes C, Le Provost G, Berges H, Fluch S, Kremer A et al. 2011. Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome. BMC Genomics 12: 292.
  • Felten J, Kohler A, Morin E, Bhalerao RP, Palme K, Martin F, Ditengou FA, Legué V. 2009. The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and Arabidopsis through auxin transport and signaling. Plant Physiology 151: 19912005.
  • Frettinger P, Derory J, Herrmann S, Plomion C, Lapeyrie F, Oelmüller R, Martin F, Buscot F. 2007. Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum. Planta 225: 331340.
  • Frettinger P, Herrmann S, Lapeyrie F, Oelmüller R, Buscot F. 2006. Differential expression of two class III chitinases in two types of roots of Quercus robur during pre-mycorrhizal interactions with Piloderma croceum. Mycorrhiza 16: 219223.
  • Gea L, Normand L, Vian B, Gay G. 1994. Structural aspects of ectomycorrhiza of Pinus pinaster (Ait.) Sol. formed by an IAA-overproducer mutant of Hebeloma cylindrosporum Romagnesi. New Phytologist 128: 659670.
  • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge YC, Gentry J et al. 2004. Bioconductor: open software development for computational biology and bioinformatics. Genome Biology 5: R80.
  • Graham JH, Linderman RG. 1980. Ethylene production by ectomycorrhizal fungi, Fusarium oxysporum f. sp. pini, and by aseptically synthesized ectomycorrhizae and Fusarium-infected Douglas fir roots. Canadian Journal of Microbiology 26: 13401357.
  • Grünwald NJ, Garbelotto M, Goss EM, Heungens K, Prospero S. 2012. Emergence of the sudden oak death pathogen Phytophthora ramorum. Trends in Microbiology 20: 131138.
  • Hajji M, Dreyer E, Marcais B. 2009. Impact of Erysiphe alphitoides on transpiration and photosynthesis in Quercus robur leaves. European Journal of Plant Pathology 125: 6372.
  • Herrmann S, Buscot F. 2007. Cross talks at the morphogenetic, physiological and gene regulation levels between the mycobiont Piloderma croceum and oak microcuttings (Quercus robur) during formation of ectomycorrhizas. Phytochemistry 68: 5267.
  • Herrmann S, Buscot F. 2008. Why and how using micropropagated trees rather than germinations for controlled synthesis of ectomycorrhizal associations. In: Varma A, ed. Mycorrhiza: state of the art, genetics and molecular biology, eco-function, biotechnology, eco-physiology, structure and systematics. Berlin, Germany: Springer, 439466.
  • Herrmann S, Munch JC, Buscot F. 1998. A gnotobiotic culture system with oak microcuttings to study specific effects of mycobionts on plant morphology before, and in the early phase of, ectomycorrhiza formation by Paxillus involutus and Piloderma croceum. New Phytologist 138: 203212.
  • Herrmann S, Oelmuller R, Buscot F. 2004. Manipulation of the, onset of ectomycorrhiza formation by indole-3-acetic acid, activated charcoal or relative humidity in the massociation between oak microcuttings and Piloderma croceum: influence on plant development and photosynthesis. Journal of Plant Physiology 161: 509517.
  • Hornett EA, Wheat CW. 2012. Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species. BMC Genomics 13: 361.
  • Iverson L, Prasad A. 2001. Potential changes in tree species richness and forest community types following climate change. Ecosystems 4: 186199.
  • Jaffee BA, Abawi GS, Mai WF. 1982. Role of soil microflora and Pratylenchus penetrans in an apple replant disease. Phytopathology 72: 247251.
  • Johansson T, Le Quéré A, Ahren D, Söderström B, Erlandsson R, Lundeberg J, Uhlen M, Tunlid A. 2004. Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. Molecular Plant-Microbe Interactions 17: 202215.
  • Jönsson U, Jung T, Rosengren U, Nihlgard B, Sonesson K. 2003. Pathogenicity of Swedish isolates of Phytophthora quercina to Quercus robur in two different soils. New Phytologist 158: 355364.
  • Jumpponen A, Jones KL. 2009. Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytologist 184: 438448.
  • Jung T, Blaschke H. 1996. Phytophthora root rot in declining forest trees. Phyton-Annales Rei Botanicae 36: 95101.
  • Kaska DD, Myllylä R, Cooper JB. 1999. Auxin transport inhibitors act through ethylene to regulate dichotomous branching of lateral root meristems in pine. New Phytologist 142: 4958.
  • Khatabi B, Molitor A, Lindermayr C, Pfiffi S, Durner J, von Wettstein D, Kogel KH, Schafer P. 2012. Ethylene supports colonization of plant roots by the mutualistic fungus Piriformospora indica. PLoS ONE 7: e35502.
  • Kistner C, Winzer T, Pitzschke A, Mulder L, Sato S, Kaneko T, Tabata S, Sandal N, Stougaard J, Webb KJ et al. 2005. Seven Lotus japonicus genes required for transcriptional reprogramming of the root during fungal and bacterial symbiosis. Plant Cell 17: 22172229.
  • Kremer A, Abbott AG, Carlson JE, Manos PS, Plomion C, Sisco P, Staton ME, Ueno S, Vendramin GG. 2012. Genomics of Fagaceae. Tree Genetics & Genomes 8: 583610.
  • Krüger A, Peskan-Berghofer T, Frettinger P, Herrmann S, Buscot F, Oelmüller R. 2004. Identification of premycorrhiza-related plant genes in the association between Quercus robur and Piloderma croceum. New Phytologist 163: 149157.
  • Lamport DTA, Kieliszewski MJ, Chen YN, Cannon MC. 2011. Role of the extensin superfamily in primary cell wall architecture. Plant Physiology 156: 1119.
  • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10: R25.
  • Larsen PE, Sreedasyam A, Trivedi G, Podila GK, Cseke LJ, Collart FR. 2011. Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. BMC Systems Biology 5: 70.
  • Le Quéré A, Wright DP, Soderstrom B, Tunlid A, Johansson T. 2005. Global patterns of gene regulation associated with the development of ectomycorrhiza between birch (Betula pendula Roth.) and Paxillus involutus (Batsch) fr. Molecular Plant-Microbe Interactions 18: 659673.
  • Lefebvre B, Timmers T, Mbengue M, Moreau S, Herve C, Toth K, Bittencourt-Silvestre J, Klaus D, Deslandes L, Godiard L et al. 2010. A remorin protein interacts with symbiotic receptors and regulates bacterial infection. Proceedings of the National Academy of Sciences, USA 107: 23432348.
  • Levy G, Becker M, Duhamel D. 1992. A comparison of the ecology of pedunculate and sessile oaks: radial growth in the center and northwest of France. Forest Ecology and Management 55: 5163.
  • Li B, Dewey CN. 2011. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12: 323.
  • Loth-Pereda V, Orsini E, Courty PE, Lota F, Kohler A, Diss L, Blaudez D, Chalot M, Nehls U, Bucher M et al. 2011. Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiology 156: 21412154.
  • Maier A, Riedlinger J, Fiedler H-P, Hampp R. 2004. Actinomycetales bacteria from a spruce stand: characterization and effects on growth of root symbiotic, and plant parasitic soil fungi in dual culture. Mycological Progress 3: 129136.
  • Marjanovic Z, Uehlein N, Kaldenhoff R, Zwiazek JJ, Weiss M, Hampp R, Nehls U. 2005. Aquaporins in poplar: what a difference a symbiont makes!. Planta 222: 258268.
  • Marquis RJ, Whelan CJ. 1994. Insectivorous birds increase growth of white oak through consumption of leaf-chewing insects. Ecology 75: 20072014.
  • Martin F, Kohler A, Duplessis S. 2007. Living in harmony in the wood underground: ectomycorrhizal genomics. Current Opinion in Plant Biology 10: 204210.
  • Marx DH. 1969. Influence of ectotrophic mycorrhizal fungi on resistance of pine roots to pathogenic infections. I. Antagonism of mycorrhizal fungi to root pathogenic fungi and soil bacteria. Phytopathology 59: 153163.
  • Münzenberger B, Otter T, Wüstrich D, Polle A. 1997. Peroxidase and laccase activities in mycorrhizal and non-mycorrhizal fine roots of Norway spruce (Picea abies) and larch (Larix decidua). Canadian Journal of Botany-Revue Canadienne De Botanique 75: 932938.
  • Nehls U. 2008. Mastering ectomycorrhizal symbiosis: the impact of carbohydrates. Journal of Experimental Botany 59: 10971108.
  • Newman AM, Cooper JB. 2011. Global analysis of proline-rich tandem repeat proteins reveals broad phylogenetic diversity in plant secretomes. PLoS ONE 6: e23167.
  • Peterson RL, Farquhar ML. 1994. Mycorrhizas: integrated development between roots and fungi. Mycologia 86: 311326.
  • Philippe RN, Ralph SG, Mansfield SD, Bohlmann J. 2010. Transcriptome profiles of hybrid poplar (Populus trichocarpa x deltoides) reveal rapid changes in undamaged, systemic sink leaves after simulated feeding by forest tent caterpillar (Malacosoma disstria). New Phytologist 188: 787802.
  • Plett JM, Martin F. 2011. Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes. Trends in Genetics 27: 1422.
  • Richard F, Millot S, Gardes M, Selosse MA. 2005. Diversity and specificity of ectomycorrhizal fungi retrieved from an old-growth Mediterranean forest dominated by Quercus ilex. New Phytologist 166: 10111023.
  • Sanchez-Rodriguez C, Rubio-Somoza I, Sibout R, Persson S. 2010. Phytohormones and the cell wall in Arabidopsis during seedling growth. Trends in Plant Science 15: 291301.
  • Sandmann T, Vogg MC, Owlarn S, Boutros M, Bartscherer K. 2011. The head-regeneration transcriptome of the planarian Schmidtea mediterranea. Genome Biology 12: R76.
  • Sauter M, Hager A. 1989. The mycorrhizal fungus Amanita muscaria induces chitinase activity in roots and in suspension-cultured cells of its host Picea abies. Planta 179: 6166.
  • Schnabelrauch LS, Kieliszewski M, Upham BL, Alizedeh H, Lamport DTA. 1996. Isolation of pl 4.6 extensin peroxidase from tomato cell suspension cultures and identification of Val-Tyr-Lys as putative intermolecular cross-link site. Plant Journal 9: 477489.
  • Schrey SD, Schellhammer M, Ecke M, Hampp R, Tarkka MT. 2005. Mycorrhiza helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria. New Phytologist 168: 205216.
  • Selle A, Willmann M, Grunze N, Gessler A, Weiss M, Nehls U. 2005. The high-affinity poplar ammonium importer PttAMT1.2 and its role in ectomycorrhizal symbiosis. New Phytologist 168: 697706.
  • Smith SE, Read D. 2008. Mycorrhizal symbiosis. London, UK: Academic Press.
  • Tagu D, Lapeyrie F, Martin F. 2002. The ectomycorrhizal symbiosis: genetics and development. Plant and Soil 244: 97105.
  • Thomas FM, Blank R, Hartmann G. 2002. Abiotic and biotic factors and their interactions as causes of oak decline in Central Europe. Forest Pathology 32: 277307.
  • Ueno S, Le Provost G, Leger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F et al. 2010. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak. BMC Genomics 11: 650.
  • Viggars RM, Tarjan AC. 1949. A new root disease of pin oaks possibly caused by the nematode Hoplolaimus coronatus Cobb. Plant Diseases Reporter 33: 132133.
  • Voiblet C, Duplessis S, Encelot N, Martin F. 2001. Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs. Plant Journal 25: 181191.
  • van de Wiel C, Scheres B, Franssen H, Vanlierop MJ, Vanlammeren A, Vankammen A, Bisseling T. 1990. The early nodulin transcript ENOD2 is located in the nodule parenchyma (inner cortex) of pea and soybean root nodules. Embo Journal 9: 17.