Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor
Version of Record online: 23 MAY 2013
© 2013 The Authors. New Phytologist © 2013 New Phytologist Trust
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Volume 199, Issue 4, pages 1060–1068, September 2013
How to Cite
Vigeland, M. D., Spannagl, M., Asp, T., Paina, C., Rudi, H., Rognli, O.-A., Fjellheim, S. and Sandve, S. R. (2013), Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor. New Phytologist, 199: 1060–1068. doi: 10.1111/nph.12337
- Issue online: 2 AUG 2013
- Version of Record online: 23 MAY 2013
- Manuscript Accepted: 18 APR 2013
- Manuscript Received: 19 MAR 2013
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Methods S1 Sequencing and assembly of the Festuca pratensis transcriptome.
Methods S2 Lolium perenne transcriptome sequencing, assembly, and analysis of differential expression between plants with and without low-temperature treatment.
Table S1 Over-represented molecular function gene ontology (GO) terms in the subset of low-temperature-induced genes
Table S2 Under-represented molecular function gene ontology (GO) terms in the subset of low-temperature-induced genes
Fig. S1 dN rate differences between maize–rice and sorghum–rice.
|nph12337-sup-0002-TableS3.txt||plain text document||254K||Table S3 Codeml results for the branch-site test on the most recent common ancestor of basal and core Pooideae (BP ancestral)|
|nph12337-sup-0003-TableS4.txt||plain text document||251K||Table S4 Codeml results for the branch-site test on the most recent common ancestor of core Pooideae (CP stem)|
|nph12337-sup-0004-NotesS1.Rdata||unknown||20101K||Notes S1 All orthologous sequence sets in raw form as R-list objects.|
|nph12337-sup-0005-NotesS2.Rdata||unknown||1715K||Notes S2 LTI orthologous sequence sets in raw form as R-list objects.|