Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures
Article first published online: 24 JUN 2013
© 2013 The Authors. New Phytologist © 2013 New Phytologist Trust
Volume 200, Issue 1, pages 251–260, October 2013
How to Cite
Combes, M.-C., Dereeper, A., Severac, D., Bertrand, B. and Lashermes, P. (2013), Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures. New Phytologist, 200: 251–260. doi: 10.1111/nph.12371
- Issue published online: 26 AUG 2013
- Article first published online: 24 JUN 2013
- Manuscript Accepted: 14 MAY 2013
- Manuscript Received: 5 APR 2013
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Fig. S1 Relative homoeologous gene expression distribution after mapping against different reference transcriptomes.
Fig. S2 Correlation between the relative homoeologous gene expressions estimated after mapping using both reference transcriptomes.
Fig. S3 Relationships between relative homoeologous gene expression and total gene expression in two growing conditions.
Table S1 Gene ontology enrichment analysis for genes showing biased homoeologous gene expression toward Ea or Ca
Table S2 Gene ontology enrichment analysis for genes showing > 10% of variation in homoeologous gene expression between the two growth conditions