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  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403410.
  • Angelopoulos K, Dichio B, Xiloyannis C. 1996. Inhibition of photosynthesis in olive trees (Olea europaea L.) during water stress. Journal of Experimental Botany 47: 10931100.
  • Anisimova M, Gascuel O. 2006. Approximate likelihood ratio test for branches: a fast, accurate and powerful alternative. Systematic Biology 55: 539552.
  • Baker NR. 2008. Chlorophyll fluorescence: a probe of photosynthesis in vivo. Annual Review of Plant Biology 59: 89113.
  • Bechtold U, Karpinski S, Mullineaux PM. 2005. The influence of the light environment and photosynthesis on oxidative signalling responses in plant–biotrophic pathogen interactions. Plant, Cell & Environment 28: 10461055.
  • Berry J, Bjorkman O. 1980. Photosynthetic response and adaptation to temperature in higher plants. Annual Review of Plant Physiology 31: 491543.
  • Bjorkman O, Badger MR, Armond PA. 1980. Responses and adaptation of photosynthesis to high temperatures. In: Turner NC, Kramer PJ, eds. Adaptation of plants to water and high temperature stress. New York, NY, USA: Wiley, 223249.
  • Brestic M, Cornic G, Fryer MJ, Baker NR. 1995. Does photorespiration protect the photosynthetic apparatus in French bean leaves from photoinhibition during drought stress. Planta 196: 450457.
  • Brooks A, Farquhar GD. 1985. Effect of temperature on the CO2/O2 specificity of ribulose-1,5-bisphosphate carboxylase/oxygenase and the rate of respiration in the light. Planta 165: 397406.
  • Bunce JA. 1998. The temperature dependence of the stimulation of photosynthesis by elevated carbon dioxide in wheat and barley. Journal of Experimental Botany 49: 15551561.
  • von Caemmerer S, Farquhar GD. 1981. Some relationships between the biochemistry of photosynthesis and the gas exchange of leaves. Planta 153: 376387.
  • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540552.
  • Cen Y-P, Sage RF. 2005. The regulation of Rubisco activase in response to variation in temperature and atmospheric CO2 partial pressure in sweet potato. Plant Physiology 139: 979990.
  • Chevenet F, Brun C, Banuls AL, Jacq B, Chisten R. 2006. TreeDyn: towards dynamic graphics and annotations for analysis of trees. BMC Bioinformatics 7: 439.
  • Constable GA, Rawson HM. 1980. Effect of leaf position, expansion and age on photosynthesis, transpiration and water use efficiency of cotton. Australian Journal of Plant Physiology 7: 89100.
  • Cornic G. 2000. Drought stress inhibits photosynthesis by decreasing stomatal aperture – not by affecting ATP synthesis. Trends in Plant Science 5: 187188.
  • Cornic G, Briantais JM. 1991. Partitioning of photosynthetic electron flow between CO2 and O2 reduction in a C3 leaf (Phaseolus vulgaris L.) at different CO2 concentrations and during drought stress. Planta 183: 178184.
  • Cornish K, Radon JW, Turcotte EL, Lu Z, Zeiger E. 1991. Enhanced photosynthesis and stomatal conductance of Pima cotton (Gossypium barbadense L.) bred for increased yield. Plant Physiology 97: 484489.
  • Crafts-Brandner SJ, Salvucci ME. 2000. Rubisco activase constrains the photosynthetic potential of leaves at high temperature and CO2. Proceedings of the National Academy of Sciences, USA 97: 1343013435.
  • Daley PF, Raschke K, Ball JT, Berry JA. 1989. Topography of photosynthetic activity of leaves obtained from video images of chlorophyll fluorescence. Plant Physiology 90: 12331238.
  • Dat JF, Foyer CH, Scott IM. 1998. Changes in salicylic acid and antioxidants during induced thermotolerance in mustard seedlings. Plant Physiology 118: 14551461.
  • Downton WJS, Grant WJR, Loveys BR. 1987. Diurnal changes in the photosynthesis of field grown grape vines. New Phytologist 105: 7180.
  • Easterling DR, Meehl GA, Parmesan C, Changnon SA, Karl TR, Mearns LO. 2000. Climate extremes: observations, modeling, and impacts. Science 289: 20682074.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 17921797.
  • Emad El-Deen HM. 2005. Population ecology of Rhazya stricta Decne in western Saudi Arabia. International Journal of Agriculture & Biology 7: 932938.
  • Feller U. 2006. Stomatal opening at elevated temperature: an underestimated regulatory mechanism. General and Applied Plant Physiology Special Issue: 1931.
  • Feller U, Crafts-Brandner SJ, Salvucci ME. 1998. Moderately high temperatures inhibit ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) activase-mediated activation of Rubisco. Plant Physiology 116: 539546.
  • Flicek P, Amode MR, Barrell D, Beal K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fairley S, Fitzgerald S et al. 2012. Ensembl 2012. Nucleic Acids Research 40: D84D90.
  • Flood PJ, Harbinson J, Aarts MGM. 2011. Natural genetic variation in plant photosynthesis. Trends in Plant Science 16: 327335.
  • Gadagkar SR, Rosenberg MS, Kumar S. 2005. Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 304: 6474.
  • Galmés J, Perdomo JA, Flexas J, Whitney SM. 2013. Photosynthetic characterization of Rubisco transplantomic lines reveals alterations on photochemistry and mesophyll conductance. Photosynthesis Research 115: 115166.
  • Garcia RL, Long SP, Wall GW, Osborne CP, Kimball BA, Nie GY, Pinter PJ, Lamorte RL, Wechsung F. 1998. Photosynthesis and conductance of spring-wheat leaves: field response to continuous free-air atmospheric CO2 enrichment. Plant, Cell & Environment 21: 659669.
  • Genty B, Briantais J-M, Baker NR. 1989. The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochimica et Biophysica Acta 990: 8792.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systemic Biology 52: 696704.
  • Hall NP, Keys AJ. 1983. Temperature dependence of the enzymic carboxylation and oxygenation of ribulose 1,5-bisphosphate in relation to effects of temperature on photosynthesis. Plant Physiology 72: 945948.
  • Henrickson L, Sharwood R, Ludwig M, Whitney SM, Badger MR, von Caemmerer S. 2008. The effects of Rubisco activase on C4 photosynthesis and metabolism at high temperature. Journal of Experimental Botany 59: 17891798.
  • Hubbard TJP, Aken BL, Ayling S, Ballester B, Beal K, Bragin E, Brent S, Chen Y, Clapham P, Clarke L et al. 2009. Ensembl 2009. Nucleic Acids Research 37: D690D697.
  • Intergovernmental Panel on Climate Change (IPCC). 2007. Contribution of Working Group II to the fourth assessment report of the Intergovernmental Panel on Climate Change. Cambridge, UK: Cambridge University Press.
  • Jordan DB, Ogren WL. 1984. The CO2/O2 specificity of ribulose 1,5-bisphosphate carboxylase/oxygenase. Planta 161: 308313.
  • Karpinski S, Gabrys H, Mateo A, Karpinska B, Mullineaux PM. 2003. Light perception in plant disease defence signalling. Current Opinion in Plant Biology 6: 390396.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772780.
  • Kurek I, Change TK, Bertain SM, Madrigal A, Liu L, Lassner MW, Zhu G. 2007. Enhanced thermostability of Arabidopsis Rubisco activase improves photosynthesis and growth rates under moderate stress. Plant Cell 19: 32303241.
  • Laurie S, Bradbury M, Steward GR. 1994. Relationships between leaf temperature, compatible solutes and anti transpirant treatments in some desert plants. Plant Science 100: 147156.
  • Laws RD, Crafts-Brandner SJ. 1999. Inhibition and acclimation of photosynthesis to heat stress is closely correlated with activation of ribulose1,5-bisphosphate carboxylase/oxygenase. Plant Physiology 120: 173181.
  • Lawson T, Kramer DM, Raines CA. 2012. Improving yield by exploiting mechanisms underlying natural variation of photosynthesis. Current Opinions in Plant Biotechnology 23: 215220.
  • Lawson T, vonCaemmerer S, Baroli I. 2010. Photosynthesis and stomatal behaviour. Progress in Botany 72: 265304.
  • Lobell DB, Asner G. 2003. Climate and management contributions to recent trends in US agriculture yields. Science 299: 1032.
  • Lobell DB, Field CB. 2007. Global scale climate–crop yield relationships and the impacts of recent warming. Environmental Research Letters 2: art. 014002.
  • Lobell DB, Hammer GL, Messina C, Roberts MJ, Schlenker W. 2013. The critical role of extreme heat for maize production in the United States. Nature Climate Change 3: 479501.
  • Lobell DB, Sibley A, Ortiz-Monasterio JI. 2012. Extreme heat effects on wheat senescence in India. Nature Climate Change 2: 186189.
  • Long SP, Bernacchi CJ. 2003. Gas exchange measurements, what can they tell us about the underlying limitations to photosynthesis? Procedures and sources of error. Journal of Experimental Botany 54: 23932401.
  • Marwat SK, Fazal ur R, Usman K, Shah SS, Anwar N, Ullah I. 2012. A review of phytochemistry, bioactivities and ethno medicinal uses of Rhazya stricta Decsne (Apocynaceae). African Journal of Microbiology Research 6: 16291641.
  • Mate CJ, Hudson GS, von Caemmerer S, Evans JR, Andrews TJ. 1993. Reduction of ribulose-bisphosphate carboxylase activase levels in tobacco (Nicotiana tabacum) by antisense RNA reduces ribulose-bisphosphate carboxylase carbamylation and impairs photosynthesis. Plant Physiology 102: 11191128.
  • Mateo A, Funck D, Mühlenbock P, Kular B, Mullineaux PM, Karpinski S. 2006. Controlled levels of salicylic acid are required for optimal photosynthesis and redox homeostasis. Journal of Experimental Botany 57: 17951807.
  • McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, Cunningham F. 2010. Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26: 20692070.
  • Meizner FC, Goldstein G, Holbrook NM, Jackson P, Cavelier J. 1993. Stomatal and environmental control of transpiration in a lowland tropical forest tree. Plant, Cell & Environment 16: 429436.
  • Mittler R. 2006. Abiotic stress, the field environment and stress combination. Trends in Plant Science 11: 1519.
  • Mooney HA, Bjorkman O, Collatz GJ. 1978. Photosynthetic acclimation to temperature in the desert shrub, Larrea divaricata. Plant Physiology 61: 406410.
  • Motzer T, Munz N, Kuppers M, Schmitt D, Anhuf D. 2005. Stomatal conductance, transpiration and sap flow of tropical montane rain forest trees in southern Ecuadorian Andes. Tree Physiology 25: 12831293.
  • Murchie E, Niyogi KK. 2011. Manipulation of photoprotection to improve plant photosynthesis. Plant Physiology 155: 8692.
  • Nambara E, Marion-Poll A. 2005. Abscisic acid biosynthesis and catabolism. Annual Review of Plant Biology 56: 165185.
  • Newton AC, Johnson SN, Gregory PJ. 2011. Implications of climate change for diseases, crop yields and food security. Euphytica 179: 318.
  • Noy-Meir I. 1973. Desert ecosystems: environment and producers. Annual Review of Ecology and Systematics 4: 2551.
  • Obehuber W, Dai ZY, Edwards GE. 1993. Light dependence of quantum yield of photosystem II and CO2 fixation in C3 and C4 plants. Photosynthesis Research 35: 265272.
  • Osmond CB, Bjorkman O. 1972. Simultaneous measurements of oxygen effects and net photosynthesis and glycolate metabolism in C3 and C4 species of Atriplex. Carnegie Institution of Washington Yearbook 11: 141148.
  • Osmond CB, Daley PF, Badger MR, Lüttge U. 1998. Chlorophyll fluorescence quenching during photosynthetic induction in leaves of Abutilon striatum Dicks. infected with Abutilon mosaic virus, observed with a field portable imaging system. Botanica Acta 111: 390397.
  • Parry MA, Andralojc PJ, Mitchell RA, Madwick PJ, Keys AI. 2003. Manipulation of Rubisco: the amount, activity, function and regulation. Journal of Experimental Botany 54: 13211333.
  • Parry MA, Andralojc PJ, Scales JC, Salvucci ME, Carmo-Silva AE, Alonso H, Whitney SM. 2012. Rubisco activity and regulation as targets for crop improvement. Journal of Experimental Botany 63: 717730.
  • Parry MA, Keys AJ, Madwick PJ, Carmo-Silva AE, Andralojc PJ. 2008. Rubisco regulation: a role for inhibitors. Journal of Experimental Botany 59: 15691580.
  • Pearcy RW. 1990. Sunflecks and photosynthesis in plant canopies. Annual Review of Plant Physiology and Plant Molecular Biology 41: 421453.
  • Peel MC, Finlayson BL, McMahon TA. 2007. Updated world map of the Köppen-Geiger climate classification. Hydrology, Earth Systems Science Discussions 4: 439473.
  • Perry RA, Goodall DW. 2009. Arid land ecosystems: structure, functioning and management. Cambridge, UK: Cambridge University Press.
  • Portis AR. 2003. Rubisco activase – Rubisco's catalytic chaperone. Photosynthesis Research 75: 1127.
  • Portis AR, Parry MA. 2007. Discoveries in Rubisco (Ribulose 1,5-bisphosphate carboxylase/oxygenase): a historical perspective. Photosynthesis Research 94: 121143.
  • Portis AR, Salvucci ME, Orgen WL. 1986. Activation of Ribulose bisphosphate carboxylase/oxygenase at physiological CO2 and Ribulose bisphosphate concentrations by Rubisco activase. Plant Physiology 82: 967971.
  • Rajendrudu G, Prasad JSR, Rama Das VS. 1986. C3–C4 intermediate species in Alternanthera (Amaranthaceae). Leaf anatomy, CO2 compensation point, net CO2 exchange and activity of photosynthesis enzymes. Plant Physiology 80: 409414.
  • Rawson HM, Begg JE, Woodward RG. 1977. The effect of atmospheric humidity on photosynthesis, transpiration and water use efficiency of leaves of several plant species. Planta 134: 510.
  • Ristic Z, Momcilovic I, Bukovnik U, Vara Prasad PV, Fu J, DeRidder BP, Elthon TE, Mladenov N. 2009. Rubisco activase and wheat productivity under heat-stress conditions. Journal of Experimental Botany 60: 40034014.
  • Rogers A, Allen DJ, Davey PA, Morgan PB, Ainsworth EA, Bernacchi CJ, Cornic G, Dermody O, Dohleman FG, Heaton EA et al. 2004. Leaf photosynthesis and carbohydrate dynamics of soybeans grown throughout their life-cycle under free-air carbon dioxide enrichment. Plant, Cell & Environment 27: 449458.
  • Rundle SJ, Zielinski RE. 1991. Organisation and expression of two randomly oriented genes encoding ribulose bisphosphate carboxylase/oxygenase activase in barley. Journal of Biological Chemistry 266: 46774685.
  • Sage RF, Kubien DS. 2007. The temperature response of C3 and C4 photosynthesis. Plant, Cell & Environment 30: 10861106.
  • Sage RF, Way DA, Kubien DS. 2008. Rubisco, Rubisco activase, and global climate change. Journal of Experimental Botany 59: 15811595.
  • Salvucci ME, Crafts-Brandner SJ. 2004a. Inhibition of photosynthesis by heat stress: the activation state of Rubisco as a limiting factor in photosynthesis. Plant Physiology 120: 179186.
  • Salvucci ME, Crafts-Brandner SJ. 2004b. Mechanisms for deactivation of Rubisco under moderate heat stress. Plant Physiology 122: 513519.
  • Salvucci ME, van de Loo FJ, Stecher D. 2003. Two isoforms of Rubisco activase in cotton, the products of separate genes not alternative splicing. Planta 216: 736744.
  • Sanchez de Jimenez S, Medrano L, Martinez-Barajas E. 1995. Rubisco activase, a possible new member of the molecular chaperone family. Biochemistry 34: 28262831.
  • Scharf K-D, Berberich T, Ebserberger I, Nover L. 2011. The plant heat stress transcription factor (Hsf) family: structure, function and evolution. Biochimica et Biophysica Acta 1819: 104119.
  • Schlenker W, Roberts MJ. 2009. Nonlinear temperature effects indicate severe damages to US crop yields under climate change. Proceedings of the National Academy of Sciences, USA 106: 1559415598.
  • Schroeder JI, Allen GJ, Hugouvieux V, Kwak JM, Waner D. 2001. Guard cell signal transduction. Annual Review of Plant Physiology and Plant Molecular Biology 52: 627658.
  • Semenova MA, Shewry PR. 2011. Modelling predicts that heat stress, not drought, will increase vulnerability of wheat in Europe. Science Reports 1: 16.
  • Seo M, Koshiba T. 2002. Complex regulation of ABA biosynthesis in plants. Trends in Plant Science 7: 4148.
  • Sharkey TD, Bernacchi CJ, Farquhar GD, Singsaas EL. 2007. Fitting photosynthetic carbon dioxide response curves for C3 leaves. Plant, Cell & Environment 30: 10351040.
  • Smart RE, Bingham GE. 1974. Rapid estimates of relative water content. Plant Physiology 53: 258260.
  • Speitzer RJ, Salvucci ME. 2002. Rubisco: structure, regulatory interactions, and possibilities for better enzymes. Annual Review of Plant Biology 53: 449475.
  • Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JGR, Korf I, Lapp H et al. 2002. The Bioperl toolkit: perl modules for the life sciences. Genome Research 12: 16111618.
  • Tezara W, Colombo R, Coronel I, Marıin O. 2011. Water relations and photosynthetic capacity of two species of Calotropis in a tropical semi-arid ecosystem. Annals of Botany 107: 397405.
  • To KY, Suen DF, Chen SCG. 1999. Molecular characterisation of ribulose-1,5-bisphosphate carboxylase/oxygenase activase in rice leaves. Planta 209: 6676.
  • Tolbert NE, Benker C, Beck E. 1995. The oxygen and carbon dioxide compensation points of C3 plants: possible role in regulating atmospheric oxygen. Proceedings of the National Academy of Sciences, USA 92: 1123011233.
  • Valladares F, Pearcy RW. 1997. Interactions between water stress, sun-shade acclimation, heat tolerance and photoinhibition in the sclerophyll Heteromeles arbutifolia. Plant, Cell & Environment 20: 2536.
  • Vandepoele K, Van de Peer Y. 2005. Exploring the plant transcriptome through phylogenetic profiling. Plant Physiology 137: 3142.
  • de Vienne DM, Ollier S, Aguileta G. 2012. Phylo-MCOA: a fast and efficient method to detect outlier genes and species in phylogenomics using multiple co-inertia analysis. Molecular Biology and Evolution 29: 15871598.
  • Wang Z-Y, Snyder GW, Esau BD, Portis AR, Ogren WL. 1992. Species-dependent variation in the interaction of substrate-bound ribulose-1,5-biphosphate carboxylase/oxygenase (Rubisco) and Rubisco activase. Plant Physiology 100: 18581862.
  • Werneke JM, Chatfield JM, Ogren WL. 1989. Alternative mRNA splicing generates the two ribulose bisphosphate carboxylase/oxygenase activase polypeptides in spinach and Arabidopsis. Plant Cell 1: 815825.
  • Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Molecular Biology and Evolution 18: 691699.
  • Whitney SM, von Caemmerer S, Hudson GS, Andrews TJ. 1999. Directed mutations of the Rubisco large subunit of tobacco influences photorespiration and growth. Plant Physiology 121: 579588.
  • Willmer C, Fricker M. 1996. Stomata, 2nd edn. London, UK: Chapman & Hall.
  • Wise RR, Olson AJ, Schrader SM, Sharkey TD. 2004. Electron transport is the functional limitation of photosynthesis in field-grown Pima cotton plants at high temperature. Plant, Cell & Environment 27: 717724.
  • Wong SC, Cowan IR, Farquhar GD. 1979. Stomatal conductance correlates with photosynthetic capacity. Nature 282: 424426.
  • Yamasaki T, Yamakawa T, Yamane Y, Koike H, Satoh K, Katoh S. 2002. Temperature acclimation of photosynthesis and related changes in photosystem II electron transport in winter wheat. Plant Physiology 128: 10871097.
  • Yamori W, Hikosaka K, Way DA. 2013. Temperature response of photosynthesis in C3, C4, and CAM plants: temperature acclimation and temperature adaptation. Photosynthesis Research. doi:10.1007/s11120-013-9874-6.