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Fig. S1 Multiple alignment of regions in PeSEP genes used for virus-induced gene silencing (VIGS) experiment.

Fig. S2 Multiple alignments of SEP-like MADS-box proteins.

Fig. S3 Over-represented motifs discovered on the 2-kb promoters of PeSEP1–4 genes using the Multiple EM for motif Elicitation (MEME) program.

Fig. S4 Phenotypes of the PeSEP-silenced Phalaenopsis I-Hsin Sunrise Cinderella.

Fig. S5 Cell types of the PeSEP-silenced flowers in Phalaenopsis I-Hsin Sunrise Cinderella.

Table S1 Primers used in this study

Table S2 Consensus CArG-box sequences used for patterning search by the fuzznuc software

Table S3 Predicted CArG boxes on the promoters of PeSEP genes

Table S4 SEP-like MADS-box genes in Orchidaceae

Methods S1 Additional information for the Materials and Methods section.

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