SEARCH

SEARCH BY CITATION

References

  • Aksoy E, Jeong IS, Koiwa H. 2013. Loss of function of Arabidopsis C-terminal domain phosphatase-like1 activates iron deficiency responses at the transcriptional level. Plant Physiology 161: 330345.
  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 33893402.
  • Arrivault S, Senger T, Krämer U. 2006. The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply. Plant Journal 46: 861879.
  • Audic S, Claverie JM. 1997. The significance of digital gene expression profiles. Genome Research 7: 986995.
  • Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA et al. 2009. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Research 37: 885890.
  • Becher M, Talke IN, Krall L, Krämer U. 2004. Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri. Plant Journal 37: 251268.
  • Belimov A, Safronova V, Demchinskaya S, Dzyuba O. 2007. Intraspecific variability of cadmium tolerance in hydroponically grown Indian mustard (Brassica juncea (L.) Czern.) seedlings. Acta Physiologiae Plantarum 29: 473478.
  • Brichler JA, Veitia RA. 2007. The gene balance hypothesis: from classical genetics to modern genomics. Plant Cell 19: 395402.
  • Cabot C, Gallego B, Martos S, Barcelo J, Poschenrieder C. 2013. Signal cross talk in Arabidopsis exposed to cadmium, silicon, and Botrytis cinerea. Planta 237: 337349.
  • Cakmak I, Ekiz H, Yilmaz A, Torun B, Köleli N, Gültekin I, Alkan A, Eker S. 1997. Differential response of rye, triticale, bread and durum wheats to zinc deficiency in calcareous soils. Plant and Soil 188: 110.
  • Cakmak I, Kalayci M, Ekiz H, Braun HJ, Kilinc Y, Yilmaz A. 1999. Zinc deficiency as a practical problem in plant and human nutrition in Turkey: a NATO-science for stability project. Field Crops Research 60: 175188.
  • Chen WW, Yang JL, Qin C, Jin CW, Mo JH, Ye T, Zheng SJ. 2010. Nitric oxide acts downstream of auxin to trigger root ferric-chelate reductase activity in response to iron deficiency in Arabidopsis. Plant Physiology 154: 810819.
  • Cheng F, Mandakova T, Wu J, Xie Q, Lysak MA, Wang X. 2013. Deciphering the diploid ancestral genome of the mesohexaploid Brassica rapa. Plant Cell 25: 15411554.
  • Cheng F, Wu J, Fang L, Sun S, Liu B, Lin K, Bonnema G, Wang X. 2012. Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa. PLoS ONE 7: e36442.
  • Chiang HC, Lo JC, Yeh KC. 2006. Genes associated with heavy metal tolerance and accumulation in Zn/Cd hyperaccumulator Arabidopsis halleri: a genomic survey with cDNA microarray. Environmental Science and Technology 40: 67926798.
  • Clemens S. 2006. Toxic metal accumulation, responses to exposure and mechanisms of tolerance in plants. Biochimie 88: 17071719.
  • Clemens S, Aarts MG, Thomine S, Verbruggen N. 2013a. Plant science: the key to preventing slow cadmium poisoning. Trends in Plant Science 18: 9299.
  • Clemens S, Deinlein U, Ahmadi H, Horeth S, Uraguchi S. 2013b. Nicotianamine is a major player in plant Zn homeostasis. BioMetals 26: 623632.
  • Colangelo EP, Guerinot ML. 2004. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. Plant Cell 16: 34003412.
  • DalCorso G, Farinati S, Maistri S, Furini A. 2008. How plants cope with cadmium: staking all on metabolism and gene expression. Journal of Integrative Plant Biology 50: 12681280.
  • Das P, Samantaray S, Rout GR. 1997. Studies on cadmium toxicity in plants: a review. Environmental Pollution 98: 2936.
  • Ebbs SD, Kochian LV. 1997. Toxicity of zinc and copper to Brassica species: implications for phytoremediation. Journal of Environmental Quality 26: 776781.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 17921797.
  • Fosmire GJ. 1990. Zinc toxicity. The American Journal of Clinical Nutrition 51: 225227.
  • Graham RD, Ascher JS, Hynes SC. 1992. Selecting zinc-efficient cereal genotypes for soils of low zinc status. Plant and Soil 146: 241250.
  • Graham RD, Welch RM, Bouis HE. 2001. Addressing micronutrient malnutrition through enhancing the nutritional quality of staple foods: principles, perspectives and knowledge gaps. Advances in Agronomy 70: 77142.
  • Graziano M, Beligni MV, Lamattina L. 2002. Nitric oxide improves internal iron availability in plants. Plant Physiology 130: 18521859.
  • Grotz N, Fox T, Connolly E, Park W, Guerinot ML, Eide D. 1998. Identification of a family of zinc transporter genes from Arabidopsis that respond to zinc deficiency. Proceedings of the National Academy of Sciences, USA 95: 72207224.
  • Guerinot ML. 2001. Improving rice yields-ironing out the details. Nature Biotechnology 19: 417418.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696704.
  • Ha M, Kim ED, Chen ZJ. 2009. Duplicate genes increase expression diversity in closely related species and allopolyploids. Proceedings of the National Academy of Sciences, USA 106: 22952300.
  • Haydon MJ, Cobbett CS. 2007. A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis. Plant Physiology 143: 17051719.
  • Haydon MJ, Kawachi M, Wirtz M, Hillmer S, Hell R, Krämer U. 2012. Vacuolar nicotianamine has critical and distinct roles under iron deficiency and for zinc sequestration in Arabidopsis. Plant Cell 24: 724737.
  • Herbette S, Taconnat L, Hugouvieux V, Piette L, Magniette MLM, Cuine S, Auroy P, Richaud P, Forestier C, Bourguignon J et al. 2006. Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots. Biochimie 88: 17511765.
  • Higuchi K, Watanabe S, Takahashi M, Kawasaki S, Nakanishi H, Nishizawa NK, Mori S. 2001. Nicotianamine synthase gene expression differs in barley and rice under Fe-deficient conditions. Plant Journal 25: 159167.
  • Imtiaz M, Alloway BJ, Shah KH, Siddiqui SH, Memon MY, Aslam M, Khan P. 2003. Zinc nutrition of wheat: II: interaction of zinc with other trace elements. Asian Journal of Plant Sciences 2: 156160.
  • Kim YY, Choi H, Segami S, Cho HT, Martinoia E, Maeshima M, Lee Y. 2009. AtHMA1 contributes to the detoxification of excess Zn(II) in Arabidopsis. Plant Journal 58: 737753.
  • Lanquar V, Lelièvre F, Barbier-Brygoo H, Thomine S. 2004. Regulation and function of AtNRAMP4 metal transporter protein. Soil Science and Plant Nutrition 50: 11411150.
  • Li R, Yu C, Li Y, Lam Lam TW, Yiu SM, Kristiansen K, Wang J. 2009. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25: 19661967.
  • Lingam S, Mohrbacher J, Brumbarova T, Potuschak T, Fink-Straube C, Blondet E, Genschik P, Bauer P. 2011. Interaction between the bHLH transcription factor FIT and ETHYLENE INSENSITIVE3/ETHYLENE INSENSITIVE3-LIKE1 reveals molecular linkage between the regulation of iron acquisition and ethylene signaling in Arabidopsis. Plant Cell 23: 18151829.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25: 402408.
  • Marschner H. 1995. Mineral nutrition of higher plants. London, UK: Academic Press.
  • Marschner H. 2012. Mineral nutrition of higher plants. London, UK: Academic Press.
  • Misook H, Eun-Deok K, Chen ZJ. 2009. Duplicate genes increase expression diversity in closely related species and allopolyploids. Proceedings of the National Academy of Sciences, USA 106: 22952300.
  • Mitchell CD, Fretz TA. 1977. Cadmium and zinc toxicity in white pine, red maple, and Norway spruce. Journal of the American Society for Horticultural Science 102: 8184.
  • Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA. 2009. Next-generation tag sequencing for cancer gene expression profiling. Genome Research 19: 18251835.
  • van de Mortel JE, AlmarVillanueva L, Schat H, Kwekkeboom J, Coughlan S, Moerland PD, Ver Loren van Themaat E, Koornneef M, Aarts MG. 2006. Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiology 142: 11271147.
  • van de Mortel JE, Schat H, Moerland PD, Ver Loren van Themaat E , van der Ent S, Blankestijn H, Ghandilyan A, Tsiatsiani S, Aarts MG. 2008. Expression differences for genes involved in lignin, glutathione and sulphate metabolism in response to cadmium in Arabidopsis thaliana and the related Zn/Cd-hyperaccumulator Thlaspi caerulescens. Plant, Cell & Environment 31: 301324.
  • Nowak MA, Boerlijst MC, Cook J, Smith JM. 1997. Evolution of genetic redundancy. Nature 388: 167171.
  • Oomen RJ, Wu J, Lelièvre F, Blanchet S, Richaud P, Barbier-Brygoo H, Aarts MG, Thomine S. 2009. Functional characterization of NRAMP3 and NRAMP4 from the metal hyperaccumulator Thlaspi caerulescens. New Phytologist 181: 637650.
  • Padawer T, Leighty RE, Wang D. 2012. Duplicate gene enrichment and expression pattern diversification in multicellularity. Nucleic Acids Research 40: 75977605.
  • Palmer CM, Hindt MN, Schmidt H, Clemens S, Guerinot ML. 2013. MYB10 and MYB72 are required for growth under iron-limiting conditions. PLoS Genetics 9: e1003953.
  • Paschke MW, Redente EF, Levy DB. 2000. Zinc toxicity thresholds for important reclamation grass species of the western united states. Environmental Toxicology and Chemistry 19: 27512756.
  • Robinson NJ, Procter CM, Connolly EL, Guerinot ML. 1999. A ferric-chelate reductase for iron uptake from soils. Nature 397: 694697.
  • Séguéla M, Briat JF, Vert G, Curie C. 2008. Cytokinins negatively regulate the root iron uptake machinery in Arabidopsis through a growth-dependent pathway. Plant Journal 55: 289300.
  • Sivitz AB, Hermand V, Curie C, Vert G. 2012. Arabidopsis bHLH100 and bHLH101 control iron homeostasis via a FIT-independent pathway. PLoS ONE 7: e44843.
  • Solano R, Stepanova A, Chao Q, Ecker JR. 1998. Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1. Genes and Development 12: 37033714.
  • Talukdar S. 2007. A comparative promoter study of ZIP4-like transporter genes of Arabidopsis thaliana and Thlaspi caerulescens. Functional characterisation of three zinc transporters in Thlaspi caerulescens. PhD thesis, Wageningen university, Wageningen, the Netherlands.
  • Van de Peer Y, Maere S, Meyer A. 2009. The evolutionary significance of ancient genome duplications. Nature Reviews Genetics 10: 725732.
  • Van Engelen DL, Boyd JS, Ekbia K. 2011. Effect of calcium and EDTA on the uptake of cadmium and lead by Brassica juncea in hydroponic growth medium. In: Benvenuto MA, Roberts-Kirchhoff ES, Murray MN, Garshott DM, eds. It's all in the water: studies of materials and conditions in fresh and salt water bodies. New York, NY, USA: Oxford University Press Inc./American Chemical Society 3550.
  • Wan G, Najeeb U, Jilani G, Naeem M, Zhou W. 2011. Calcium invigorates the cadmium-stressed Brassica napus L. plants by strengthening their photosynthetic system. Environmental Science and Pollution Research 18: 14781486.
  • Wang HY, Klatte M, Jakoby M, Baumlein H, Weisshaar B, Bauer P. 2007. Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana. Planta 226: 897908.
  • Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F et al. 2011. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics 43: 10351039.
  • Waters BM, Blevins DG, Eide DJ. 2002. Characterization of FRO1, a pea ferric-chelate reductase involved in root iron acquisition. Plant Physiology 129: 8594.
  • Weber M, Trampczynska A, Clemens S. 2006. Comparative transcriptome analysis of toxic metal responses in Arabidopsis thaliana and the Cd2+-hypertolerant facultative metallophyte Arabidopsis halleri. Plant, Cell & Environment 29: 950963.
  • Welch RM, Graham RD. 2004. Breeding for micronutrients in staple food crops from a human nutrition perspective. Journal of Experimental Botany 55: 353364.
  • Williams LE, Mills RF. 2005. P(1B)-ATPases – an ancient family of transition metal pumps with diverse functions in plants. Trends in Plant Science 10: 491502.
  • Wintz H, Fox T, Wu YY, Feng V, Chen W, Chang HS, Zhu T, Vulpe C. 2003. Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis. Journal of Biological Chemistry 278: 4764447653.
  • Wu H, Chen C, Du J, Liu H, Cui Y, Zhang Y, He Y, Wang Y, Chu C, Feng Z et al. 2012. Co-overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-enhanced cadmium tolerance via increased cadmium sequestration in roots and improved iron homeostasis of shoots. Plant Physiology 158: 790800.
  • Wu J, Schat H, Sun R, Koornneef M, Wang X, Aarts MG. 2007. Characterization of natural variation for zinc, iron and manganese accumulation and zinc exposure response in Brassica rapa L. Plant and Soil 291: 167180.
  • Xue J, Bao YY, Bl Li, Cheng YB, Peng ZY, Liu H, Xu HJ, Zhu ZR, Lou YG, Cheng JA et al. 2010. Transcriptome analysis of the brown planthopper Nilaparvata lugens. PLoS ONE 5: e14233.
  • Yuan Y, Wu H, Wang N, Li J, Zhao W, Du J, Wang D, Ling HQ. 2008. FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis. Cell Research 18: 385397.