SEARCH

SEARCH BY CITATION

References

  • Bogdanove, A.J. and Voytas, D.F. (2011) TAL effectors: customizable proteins for DNA targeting. Science, 333, 18431846.
  • Cai, C.Q., Doyon, Y., Ainley, W.M., Miller, J.C., Dekelver, R.C., Moehle, E.A., Rock, J.M., Lee, Y.-L., Garrison, R., Schulenberg, L., Blue, R., Worden, A., Baker, L., Faraji, F., Zhang, L., Holmes, M.C., Rebar, E.J., Collingwood, T.N., Rubin-Wilson, B., Gregory, P.D., Urnov, F.D. and Petolino, J.F. (2009) Targeted transgene integration in plant cells using designed zinc finger nucleases. Plant Mol. Biol. 69, 699709.
  • Cermak, T., Doyle, E.L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J.A., Somia, N.V., Bogdanove, A.J. and Voytas, D.F. (2011) Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic Acids Res. 39, e82.
  • Clough, S.J. and Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735743.
  • Curtin, S.J., Zhang, F., Sander, J.D., Haun, W.J., Starker, C., Baltes, N.J., Reyon, D., Dahlborg, E.J., Goodwin, M.J., Coffman, A.P., Dobbs, D., Joung, J.K., Voytas, D.F. and Stupar, R.M. (2011) Targeted mutagenesis of duplicated genes in soybean with zinc finger nucleases. Plant Physiol. 156, 466473.
  • Even-Faitelson, L., Samach, A., Melamed-Bessudo, C., Avivi-Ragolsky, N. and Levy, A.A. (2011) Localized egg-cell expression of effector proteins for targeted modification of the Arabidopsis genome. Plant J. 68, 929937.
  • Fauser, F., Roth, N., Pacher, M., Ilg, G., Sanchez-Fernandez, R., Biesgen, C. and Puchta, H. (2012) In planta gene targeting. Proc. Natl Acad. Sci. USA, 109, 75357540.
  • Gallego, M.E., Sirand-Pugnet, P. and White, C.I. (1999) Positive-negative selection and T-DNA stability in Arabidopsis transformation. Plant Mol. Biol. 39, 8393.
  • Halfter, U., Morris, P. and Willmitzer, L. (1992) Gene targeting in Arabidopsis thaliana. Mol. Gen. Genet. 231, 184193.
  • Hanin, M., Volrath, S., Bogucki, A., Briker, M., Ward, E. and Paszkowski, J. (2001) Gene targeting in Arabidopsis. Plant J. 28, 671677.
  • Hrouda, M. and Paszkowski, J. (1994) High fidelity extrachromosomal recombination and gene targeting in plants. Mol. Gen. Genet. 243, 106111.
  • Iida, S. and Terada, R. (2005) Modification of endogenous natural genes by gene targeting in rice and other higher plants. Plant Mol. Biol. 59, 205219.
  • Jia, Q., Bundock, P., Hooykaas, P.J.J. and de Pater, S. (2012) Agrobacterium tumefaciens T-DNA integration and gene-targeting in Arabidopsis thaliana non-homologous end-joining mutants. J. Botany, 2012, 989272. Doi: 10.1155/2012/989272.
  • Klug, A. (2010) The discovery of zinc fingers and their applications in gene regulation and genome manipulation. Annu. Rev. Biochem. 79, 213231.
  • Lazo, G.R., Stein, P.A. and Ludwig, R.A. (1991) A DNA transformation-competent Arabidopsis genomic library in Agrobacterium. Biotechnology, 9, 963967.
  • Lee, K.Y., Lund, P., Lowe, K. and Dunsmuir, P. (1990) Homologous recombination in plant cells after Agrobacterium-mediated transformation. Plant Cell, 2, 41525.
  • Lloyd, A., Plaisier, C.L., Carroll, D. and Drews, G.N. (2005) Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. Proc. Natl Acad. Sci. USA, 102, 22322237.
  • Mahfouz, M.M., Li, L., Shamimuzzaman, M., Wibowo, A., Fang, X. and Zhu, J.-K. (2011) De novo-engineered transcription activator-like effector (TALE) hybrid nuclease with novel DNA binding specificity creates double-strand breaks. Proc. Natl Acad. Sci. USA, 108, 26232628.
  • Miao, Z.H. and Lam, E. (1995) Targeted disruption of the TGA3 locus in Arabidopsis thaliana. Plant J. 7, 359365.
  • Neuteboom, L.W., Lindhout, B.I., Saman, I.L., Hooykaas, P.J.J. and van der Zaal, B.J. (2006) Effects of different zinc finger transcription factors on genomic targets. Biochem. Biophys. Res. Commun. 339, 263270.
  • Offringa, R., de Groot, M.J.A., Haagsman, H.J., Does, M.P., van der Elzen, P.J.M. and Hooykaas, P.J.J. (1990) Extrachromosomal homologous recombination and gene targeting in plant cells after Agrobacterium mediated transformation. EMBO J. 9, 30773084.
  • Osakabe, K., Osakabe, Y. and Toki, S. (2010) Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases. Proc. Natl Acad. Sci. USA, 107, 1203412039.
  • Paszkowski, J., Baur, M., Bogucki, A. and Potrykus, I. (1988) Gene targeting in plants. EMBO J. 7, 40214026.
  • de Pater, S., Neuteboom, L.W., Pinas, J.E., Hooykaas, P.J.J. and van der Zaal, B.J. (2009) ZFN-induced mutagenesis and gene-targeting in Arabidopsis through Agrobacterium-mediated floral dip transformation. Plant Biotech. J. 7, 821835.
  • Puchta, H., Dujon, B. and Hohn, B. (1996) Two different but related mechanisms are used in plants for the repair of genomic double-strand breaks by homologous recombination. Proc. Natl Acad. Sci. USA, 93, 50555060.
  • Riseeuw, E., Offringa, R., Franke-van Dijk, M.E.I. and Hooykaas, P.J.J. (1995) Targeted recombination in plants using Agrobacterium coincides with additional rearrangements at the target locus. Plant J. 7, 109119.
  • San Filippo, J., Sung, P. and Klein, H. (2008) Mechanism of eukaryotic homologous recombination. Annu. Rev. Biochem. 77, 229257.
  • Schaefer, D.G. (2002) A new moss genetics: targeted mutagenesis in Physcomitrella patens. Annu. Rev. Plant Biol. 53, 477501.
  • Shukla, V.K., Doyon, Y., Miller, J.C., DeKelver, R.C., Moehle, E.A., Worden, S.E., Mitchell, J.C., Arnold, N.L., Gopalan, S., Meng, X., Choi, V.M., Rock, J.M., Wu, Y.-Y., Katibah, G.E., Zhifang, G., McCaskill, D., Simpson, M.A., Blakeslee, B., Greenwalt, S.A., Butler, H.J., Hinkley, S.J., Zhang, L., Rebar, E.J., Gregory, P.D. and Urnov, F.D. (2009) Precise genome modification in the crop species Zea mays using zinc-finger nucleases. Nature, 459, 437441.
  • Terada, R., Johzuka-Hisatomi, Y., Saitoh, M., Asao, H. and Iida, S. (2007) Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics. Plant Physiol. 144, 846856.
  • Tovkach, A., Zeevi, V. and Tzfira, T. (2009) A toolbox and procedural notes for characterizing novel zinc finger nucleases for genome editing in plant cells. Plant J. 57, 74757.
  • Townsend, J.A., Wright, D.A., Winfrey, R.J., Fu, F., Maeder, M.L., Joung, J.K. and Voytas, D.F. (2009) High-frequency modification of plant genes using engineered zinc-finger nucleases. Nature, 459, 442445.
  • Wang, H.X., Viret, J.-F., Eldridge, A., Perera, R., Signer, E.R. and Chiurazzi, M. (2001) Positive-Negative selection for homologous recombination in Arabidopsis. Gene, 272, 249255.
  • Wright, D.A., Townsend, J.A., Winfrey, R.J., Irwin, P.A., Rajagopal, J., Lonosky, P.M., Hall, B.D., Jondle, M.D. and Voytas, D.F. (2005) High-frequency homologous recombination in plants mediated by zinc-finger nucleases. Plant J. 44, 693705.
  • Zhang, F., Maeder, M.L., Unger-wallace, E., Hoshaw, J.P., Reyon, D. and Christian, M. (2010) High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases. Proc. Natl Acad. Sci. USA, 107, 1202812033.