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Figure S1. Graphical genotypes for the eleven introgression lines which were used in the previous analysis of Gu et al. (2012b) for assigning the genome regions to six photosynthesis parameters.

Figure S2. Variation during the rice growing season of main weather variables at Beijing (BJ), year 2008, 2009 (summer season) and at Los Baños, Philippines (PH), 2001–2005 (dry season).

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