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ppl12009-sup-0001-AppendixS1.tifTIFF image472KFig. S1. (A) Polymerase similarity tree of Arabidopsis polIA and polIB genes and orthologs of various plant species (http://bar.utoronto.ca/expressolog_treeviewer/cgi-bin/expressolog_treeviewer.cgi). (B) Map indicating unique DNA sequences and regions within the promoter regions of Arabidopsis polIA and polIB genes generated with Athena (O'Connor et al. 2005). Blue boxes within the promoter region are CpG islands. polIA promoter region predictions: ARF binding site motif at −2439; AtMYC2 BS in RD22 at −1022; CARGCW8GAT at −1001, −760, −347, −347, −760, −1001; CCA1 binding site motif at −2390; CDA1ATCAB2 at −2786; E2F binding site motif at −2779; GAREAT at −1363, −340; I box promoter motif at −2827; MYB binding site promoter at −845, −721; MYB1AT at −2538, −2469, −2403, −2205, −920, −848, −843, −724, −719, −1344 at −1646; MYB2AT at −1931, −418, −1316; MYB4 binding site motif at −845, −721; MYCATERD1 at −1022; RAV1-B binding site motif at −2752; T-box promoter motif at −2621, −334; TATA-box Motif at −348; W-box promoter motif at −643, −272, −1200. polIB promoter region predictions: ARF binding site motif at −1876; AtMYC2 BS in RD22 at −961; BoxII promoter motif at −1435, −2276; CARGCW8GAT at −321; DRE core motif at −2498; DREB1A/CBF3 at −2496; I box promoter motif at −2512; L1-box promoter motif at −2560; MYB1AT at −2335, −2275, −814, −754, −201, −728, −742, −1414, −1472, −2143; MYB4 binding site motif at −436, −985, −1443, −2189; MYCATERD1 at −961; SV40 at −1471; T-box at −456; TATA-box at −1188, −2558, −2821; and W-box promoter motif at −2950, −2662, −271.
ppl12009-sup-0002-AppendixS2.tifTIFF image517K Fig. S2. Root growth rates of the polIb-2 mutant relative to wild-type plants.
ppl12009-sup-0003-AppendixS3.tifTIFF image3067K Fig. S3. Plant phenotypes.
ppl12009-sup-0004-AppendixS4.tifTIFF image5540K Fig. S4. Determination of whether the polIb-2 mutant has a cell division defect.
ppl12009-sup-0005-AppendixS5.tifTIFF image2520K Fig. S5. Determination of chloroplast counts in the polIb-2 mutant relative to wild-type plants.
ppl12009-sup-0006-AppendixS6.tifTIFF image316K Fig. S6. Light curves generated from gas exchange experiments with mutant and wild-type plants.
ppl12009-sup-0007-AppendixS7.tifTIFF image140K Fig. S7. Carbon assimilation curve indicates that the polIb-2 mutant has a greater capacity to assimilate carbon at lower carbon dioxide levels as compared to wild type.

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