SEARCH

SEARCH BY CITATION

References

  • Autran, D., Baroux, C., Raissig, M.T. et al. (2011) Maternal epigenetic pathways control paternal contributions to early Arabidopsis embryogenesis. Cell, 145, 707719.
  • Baroux, C., Gagliardini, V., Page, D.R. and Grossniklaus, U. (2006) Dynamic regulatory interactions of Polycomb group genes: MEDEA autoregulation is required for imprinted gene expression in Arabidopsis. Genes Dev. 20, 10811086.
  • Bouyer, D., Roudier, F., Heese, M. et al. (2011) Polycomb Repressive Complex 2 controls the embryo-to-seedling phase transition. PLoS Genet. 7, e1002014.
  • Cao, X., Aufsatz, W., Zilberman, D., Mette, M.F., Huang, M.S., Matzke, M. and Jacobsen, S.E. (2003) Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr. Biol. 13, 22122217.
  • Cedar, H. and Bergman, Y. (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 10, 295304.
  • Chaudhury, A.M., Ming, L., Miller, C., Craig, S., Dennis, E.S. and Peacock, W.J. (1997) Fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 94, 42234228.
  • Choi, Y., Gehring, M., Johnson, L., Hannon, M., Harada, J.J., Goldberg, R.B., Jacobsen, S.E. and Fischer, R.L. (2002) DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell, 110, 3342.
  • Cokus, S.J., Feng, S., Zhang, X., Chen, Z., Merriman, B., Haudenschild, C.D., Pradhan, S., Nelson, S.F., Pellegrini, M. and Jacobsen, S.E. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452, 215219.
  • Dumbliauskas, E., Lechner, E., Jaciubek, M. et al. (2011) The Arabidopsis CUL4–DDB1 complex interacts with MSI1 and is required to maintain MEDEA parental imprinting. EMBO J. 30, 731743.
  • Erilova, A., Brownfield, L., Exner, V., Rosa, M., Twell, D., Mittelsten Scheid, O., Hennig, L. and Köhler, C. (2009) Imprinting of the Polycomb group gene MEDEA serves as a ploidy sensor in Arabidopsis. PLoS Genet. 5, e1000663.
  • Estojak, J., Brent, R. and Golemis, E.A. (1995) Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 15, 58205829.
  • Finnegan, E.J. and Kovac, K.A. (2000) Plant DNA methyltransferases. Plant Mol. Biol. 43, 189201.
  • FitzGerald, J., Luo, M., Chaudhury, A. and Berger, F. (2008) DNA methylation causes predominant maternal controls of plant embryo growth. PLoS ONE, 3, e2298.
  • Fuks, F., Burgers, W.A., Brehm, A., Hughes-Davies, L. and Kouzarides, T. (2000) DNA methyltransferase DNMT1 associates with histone deacetylase activity. Nat. Genet. 24, 8891.
  • Gehring, M., Huh, J.H., Hsieh, T.F., Penterman, J., Choi, Y., Harada, J.J., Goldberg, R.B. and Fischer, R.L. (2006) DEMETER DNA glycosylase establishes MEDEA Polycomb gene self-imprinting by allele-specific demethylation. Cell, 124, 495506.
  • Gehring, M., Bubb, K.L. and Henikoff, S. (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science, 324, 14471451.
  • Grossniklaus, U. and Vielle-Calzada, J.P. (1998) Parental conflict and infanticide during embryogenesis. Trends Plant Sci. 3, 328.
  • Grossniklaus, U., Vielle-Calzada, J.P., Hoeppner, M.A. and Gagliano, W.B. (1998) Maternal control of embryogenesis by MEDEA, a Polycomb group gene in Arabidopsis. Science, 280, 446450.
  • Grossniklaus, U., Spillane, C., Page, D.R. and Köhler, C. (2001) Genomic imprinting and seed development: endosperm formation with and without sex. Curr. Opin. Plant Biol. 4, 2127.
  • Guitton, A.E. and Berger, F. (2005) Control of reproduction by Polycomb group complexes in animals and plants. Int. J. Dev. Biol. 49, 707716.
  • Hennig, L. and Derkacheva, M. (2009) Diversity of Polycomb group complexes in plants: same rules, different players? Trends Genet. 25, 414423.
  • Hsieh, T.F., Ibarra, C.A., Silva, P., Zemach, A., Eshed-Williams, L., Fischer, R.L. and Zilberman, D. (2009) Genome-wide demethylation of Arabidopsis endosperm. Science, 324, 14511454.
  • Jin, B., Yao, B., Li, J.L., Fields, C.R. and Delmas, A.L. (2009) DNMT1 and DNMT3B modulate distinct Polycomb-mediated histone modifications in colon cancer. Cancer Res. 69, 74127421.
  • Jin, B., Li, Y. and Robertson, K.D. (2011) DNA methylation: superior or subordinate in the epigenetic hierarchy? Genes Cancer, 2, 607617.
  • Jullien, P.E., Katz, A., Oliva, M., Ohad, N. and Berger, F. (2006a) Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. Curr. Biol. 16, 486492.
  • Jullien, P.E., Kinoshita, T., Ohad, N. and Berger, F. (2006b) Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell, 18, 13601372.
  • Jullien, P.E., Mosquna, A., Ingouff, M., Sakata, T., Ohad, N. and Berger, F. (2008) Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol. 6, e194.
  • Kiyosue, T., Ohad, N., Yadegari, R. et al. (1999) Control of fertilization-independent endosperm development by the MEDEA gene in Arabidopsis. Proc. Natl Acad. Sci. USA, 96, 41864191.
  • Köhler, C. and Grossniklaus, U. (2002) Epigenetic inheritance of expression states in plant development: the role of Polycomb group proteins. Curr. Opin. Cell Biol. 14, 773779.
  • Köhler, C., Hennig, L., Bouveret, R., Gheyselinck, J., Grossniklaus, U. and Gruissem, W. (2003a) Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J. 22, 48044814.
  • Köhler, C., Hennig, L., Spillane, C., Pien, S., Gruissem, W. and Grossniklaus, U. (2003b) The Polycomb group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1. Genes Dev. 17, 15401553.
  • Köhler, C., Page, D.R., Gagliardini, V., and Grossniklaus, U. (2005) The Arabidopsis thaliana MEDEA Polycomb group protein controls expression of PHERES1 by parental imprinting. Nat Genet. 37, 2830.
  • Lister, R., O'Malley, R.C., Tonti-Filippini, J., Gregory, B.G., Berry, C.C., Millar, A.H. and Ecker, J.R. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523536.
  • Liu, X., Yu, C.W., Duan, J., Luo, M. and Wang, K. (2012) HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis. Plant Physiol. 158, 119129.
  • Luo, M., Bilodeau, P., Koltunow, A., Dennis, E.S., Peacock, W.J. and Chaudhury, A.M. (1999) Genes controlling fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 96, 296301.
  • Luo, M., Bilodeau, P., Dennis, E.S., Peacock, W.J. and Chaudury, A. (2000) Expression of parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Proc. Natl Acad. Sci. USA, 97, 1063710642.
  • Luo, M., Lou, M.Z., Buzas, D., Finnegan, J., Helliwell, C., Dennis, E.S., Peacock, W.J. and Chaudhury, A. (2008) UBIQUITIN-SPECIFIC PROTEASE 26 is required for seed development and the repression of PHERES1 in Arabidopsis. Genetics, 180, 229236.
  • Lutsik, P., Feuerbach, L., Arand, J., Lengauer, T., Walter, J. and Bock, C. (2011) BioQ analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing. Nucleic Acids Res. 39, W551W556.
  • Ma, J. and Ptashne, M. (1987) A new class of yeast transcriptional activators. Cell, 51, 113119.
  • Mahmoudi, T. and Verrijzer, C.P. (2001) Chromatin silencing and activation by Polycomb and trithorax group proteins. Oncogene, 20, 30553066.
  • Makarevich, G., Leroy, O., Akinci, U., Schubert, D., Clarenz, O., Goodrich, J., Grossniklaus, U. and Köhler, C. (2006) Different Polycomb group complexes regulate common target genes in Arabidopsis. EMBO Rep. 7, 947952.
  • Makaverich, G., Villar, C.B., Erilova, A. and Köhler, C. (2008) Mechanism of PHERES1 imprinting in Arabidopsis. J. Cell Sci. 121, 906912.
  • Martin, C., Cao, R. and Zhang, Y.I. (2006) Substrate preferences of the EZH2 histone methyltransferase complex. J. Biol. Chem. 281, 83658370.
  • Ohad, N., Margossian, L., Hsu, Y.C., Williams, C., Repetti, P. and Fischer, R.L. (1996) A mutation that allows endosperm development without fertilization. Proc. Natl Acad. Sci. USA, 93, 53195324.
  • Ohad, N., Yadegari, R., Margossian, L., Hannon, M., Michaeli, D., Harada, J.J., Goldberg, R.B. and Fischer, R.L. (1999) Mutations in FIE, a WD Polycomb group gene, allow endosperm development without fertilization. Plant Cell, 11, 407416.
  • Pien, S. and Grossniklaus, U. (2007) Polycomb group and trithorax group proteins in Arabidopsis. Biochim. Biophys. Acta, 1769, 375382.
  • Pillot, M., Baroux, C., Vazques, M.A., Autran, D., Leblanc, O., Vielle-Calzada, J.P., Grossniklaus, U. and Grimanelli, D. (2010) Embryo and endosperm inherit distinct chromatin and transcriptional states from the female gametes in Arabidopsis. Plant Cell, 22, 307320.
  • Reyes, J.C. and Grossniklaus, U. (2003) Diverse functions of Polycomb group proteins during plant development. Semin. Cell Dev. Biol. 14, 7784.
  • Rodrigues, J.C., Luo, M., Berger, F. and Koltunow, A.M. (2010) Polycomb group gene function in sexual and asexual seed development in angiosperms. Sex. Plant Reprod. 23, 123133.
  • Rush, M., Appanah, R., Lee, S., Lam, L.L., Goyal, P. and Lorincz, M.C. (2009) Targeting of EZH2 to a defined genomic site is sufficient for recruitment of DNMT3a but not de novo methylation. Epigenetics, 4, 404414.
  • Simon, J.A. and Tamkun, J.W. (2002) Programming off and on states in chromatin: mechanisms of Polycomb and trithorax group complexes. Curr. Opin. Genet. Dev. 12, 210218.
  • Spillane, C., MacDougall, C., Stock, C., Köhler, C., Vielle-Calzada, J.P., Nunes, S.M., Grossniklaus, U. and Goodrich, J. (2000) Interaction of the Arabidopsis Polycomb group proteins FIE and MEA mediates their common phenotypes. Curr. Biol. 10, 15351538.
  • Spillane, C., Schmid, K.J., Laoueillé-Duprat, S., Pien, S., Escobar-Restrepo, J.M., Baroux, C., Gagliardini, V., Page, D.R., Wolfe, K.H. and Grossniklaus, U. (2007) Positive Darwinian selection at the imprinted MEDEA locus in plants. Nature, 448, 349352.
  • Tiwari, S., Spielman, M., Schulz, R., Oakey, R.J., Kelsey, G., Salazar, A., Zhang, K., Pennell, R. and Scott, R.J. (2010) Transcriptional profiles underlying parent-of-origin effects in seeds of Arabidopsis thaliana. BMC Plant Biol. 10, 72.
  • Vielle-Calzada, J.P., Thomas, J., Spillane, C., Coluccio, A., Hoeppner, M.A. and Grossniklaus, U. (1999) Maintenance of genomic imprinting at the Arabidopsis MEDEA locus requires zygotic DDM1 activity. Genes Dev. 13, 29712982.
  • Villar, C.B., Erilova, A., Makaverich, G., Trösch, R. and Köhler, C. (2009) Control of PHERES1 imprinting in Arabidopsis by direct tandem repeats. Mol. Plant, 2, 654660.
  • Vinkenoog, R., Spielman, M., Adams, S., Fischer, R.L., Dickinson, H.G. and Scott, R.J. (2000) Hypomethylation promotes autonomous endosperm development and rescues postfertilization lethality in fie mutants. Plant Cell, 12, 22712282.
  • Viré, E., Brenner, C., Deplus, R. et al. (2006) The Polycomb group protein EZH2 directly controls DNA methylation. Nature, 439, 871874.
  • Wang, D., Tyson, M.D., Jackson, S.S. and Yadegari, R. (2006) Partially redundant functions of two SET-domain Polycomb group proteins in controlling initiation of seed development in Arabidopsis. Proc. Natl Acad. Sci. USA, 103, 1324413249.
  • Warnes, G., Bolker, B., and Lumley, T. (2010) gplots: Various R programming tools for plotting data. (www.bioconductor.org)
  • Weinhofer, I., Hehenberger, E., Roszak, P., Hennig, L. and Köhler, C. (2010) H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation. PLoS Genet. 6, e1001152.
  • Wöhrmann, H.P.J., Gagliardini, V., Raissig, M.T. et al. (2012) Identification of a DNA-methylation-independent imprinting control region at the Arabidopsis MEDEA locus. Genes Dev., 26, 18371850.
  • Wuest, S.E., Vijverberg, K., Schmidt, A., Weiss, M., Gheyselinck, J., Lohr, M., Wellmer, F., Rahnenführer, J., von Mering, C. and Grossniklaus, U. (2010) Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. Curr. Biol. 20, 506512.
  • Xiao, W., Gehring, M., Choi, Y., Margossian, L., Pu, H., Harada, J.L., Goldberg, R.B., Penell, R.I. and Fisher, R.L. (2003) Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase. Dev. Cell, 5, 891901.
  • Yadegari, R., Kinoshita, T., Lotan, O., Cohen, G., Katz, A., Nakashima, K., Harada, J.J., Goldberg, R.B., Fischer, R.L. and Ohad, N. (2000) Mutations in the FIE and MEA genes that encode interacting Polycomb group proteins cause parent-of-origin effects on seed development by distinct mechanisms. Plant Cell, 12, 23672382.