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  • Aida, M., Beis, D., Heidstra, R., Willemsen, V., Blilou, I., Galinha, C., Nussaume, L., Noh, Y.S., Amasino, R. and Scheres, B. (2004) The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche. Cell, 119, 109120.
  • Argyros, R.D., Mathews, D.E., Chiang, Y.H., Palmer, C.M., Thibault, D.M., Etheridge, N., Argyros, D.A., Mason, M.G., Kieber, J.J. and Schaller, G.E. (2008) Type B response regulators of Arabidopsis play key roles in cytokinin signaling and plant development. Plant Cell, 20, 21022116.
  • Atta, R., Laurens, L., Boucheron-Dubuisson, E., Guivarc'h, A., Carnero, E., Giraudat-Pautot, V., Rech, P. and Chriqui, D. (2009) Pluripotency of Arabidopsis xylem pericycle underlies shoot regeneration from root and hypocotyl explants grown in vitro. Plant J. 57, 626644.
  • Banno, H., Ikeda, Y., Niu, Q.W. and Chua, N.H. (2001) Overexpression of Arabidopsis ESR1 induces initiation of shoot regeneration. Plant Cell, 13, 26092618.
  • Birnbaum, K., Shasha, D.E., Wang, J.Y., Jung, J.W., Lambert, G.M., Galbraith, D.W. and Benfey, P.N. (2003) A gene expression map of the Arabidopsis root. Science, 302, 19561960.
  • Birnbaum, K., Jung, J.W., Wang, J.Y., Lambert, G.M., Hirst, J.A., Galbraith, D.W. and Benfey, P.N. (2005) Cell type-specific expression profiting in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat. Methods, 2, 615619.
  • Bonnet, H.T. and Torrey, J.G. (1966) Comparative anatomy of endogenous bud and lateral root formation in Convolvulus arvensis roots cultured in vitro. Am. J. Bot. 53, 496507.
  • Brady, S.M., Orlando, D.A., Lee, J.Y., Wang, J.Y., Koch, J., Dinneny, J.R., Mace, D., Ohler, U. and Benfey, P.N. (2007) A high-resolution root spatiotemporal map reveals dominant expression patterns. Science, 318, 801806.
  • Brand, U., Fletcher, J.C., Hobe, M., Meyerowitz, E.M. and Simon, R. (2000) Dependence of stem cell fate in Arabidopsis an a feedback loop regulated by CLV3 activity. Science, 289, 617619.
  • Brand, U., Grunewald, M., Hobe, M. and Simon, R. (2002) Regulation of CLV3 expression by two homeobox genes in Arabidopsis. Plant Physiol. 129, 565575.
  • Busch, W., Miotk, A., Ariel, F.D. et al. (2010) Transcriptional control of a plant stem cell niche. Dev. Cell, 18, 849861.
  • Casson, S., Spencer, M., Walker, K. and Lindsey, K. (2005) Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J. 42, 111123.
  • Chatfield, S.P. and Raizada, M.N. (2008) Ethylene and shoot regeneration: hookless1 modulates de novo shoot organogenesis in Arabidopsis thaliana. Plant Cell Rep. 27, 655666.
  • Che, P., Lall, S., Nettleton, D. and Howell, S.H. (2006) Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. Plant Physiol. 141, 620637.
  • Che, P., Lall, S. and Howell, S.H. (2007) Developmental steps in acquiring competence for shoot development in Arabidopsis tissue culture. Planta, 226, 11831194.
  • Dello Ioio, R., Linhares, F.S., Scacchi, E., Casamitjana-Martinez, E., Heidstra, R., Costantino, P. and Sabatini, S. (2007) Cytokinins determine Arabidopsis root-meristem size by controlling cell differentiation. Curr. Biol. 17, 678682.
  • Fiers, M., Golemiec, E., Xu, J., van der Geest, L., Heidstra, R., Stiekema, W. and Liu, C.M. (2005) The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell, 17, 25422553.
  • Fletcher, L.C., Brand, U., Running, M.P., Simon, R. and Meyerowitz, E.M. (1999) Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science, 283, 19111914.
  • Galinha, C., Hofhuis, H., Luijten, M., Willemsen, V., Blilou, I., Heidstra, R. and Scheres, B. (2007) PLETHORA proteins as dose-dependent master regulators of Arabidopsis root development. Nature, 449, 10531057.
  • Gallois, J.L., Nora, F.R., Mizukami, Y. and Sablowski, R. (2004) WUSCHEL induces shoot stem cell activity and developmental plasticity in the root meristem. Genes Dev. 18, 375380.
  • Gentleman, R.C., Carey, V.J., Bates, D.M. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, 15.
  • Gifford, M.L., Dean, A., Gutierrez, R.A., Coruzzi, G.M. and Birnbaum, K.D. (2008) Cell-specific nitrogen responses mediate developmental plasticity. Proc. Natl Acad. Sci. USA, 105, 803808.
  • Gordon, S.P., Heisler, M.G., Reddy, G.V., Ohno, C., Das, P. and Meyerowitz, E.M. (2007) Pattern formation during de novo assembly of the Arabidopsis shoot meristem. Development, 134, 35393548.
  • Gordon, S.P., Chickarmane, V.S., Ohno, C. and Meyerowitz, E.M. (2009) Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem. Proc. Natl Acad. Sci. USA, 106, 1652916534.
  • Hamaguchi, A., Yamashino, T., Koizumi, N., Kiba, T., Kojima, M., Sakakibara, H. and Mizuno, T. (2008) A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis. Biosci. Biotechnol. Biochem. 72, 26872696.
  • Himanen, K., Vuylsteke, M., Vanneste, S., Vercruysse, S., Boucheron, E., Alard, P., Chriqui, D., Van Montagu, A., Inze, D. and Beeckman, T. (2004) Transcript profiling of early lateral root initiation. Proc. Natl Acad. Sci. USA, 101, 51465151.
  • Hubbell, E., Liu, W.M. and Mei, R. (2002) Robust estimators for expression analysis. Bioinformatics, 18, 15851592.
  • Ikeda, M., Mitsuda, N. and Ohme-Takagi, M. (2009) Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. Plant Cell, 21, 34933505.
  • Jonsson, H., Heisler, M., Reddy, G.V., Agrawal, V., Gor, V., Shapiro, B.E., Mjolsness, E. and Meyerowitz, E.M. (2005) Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. Bioinformatics, 21, I232I240.
  • Kerstetter, R.A. and Hake, S. (1997) Shoot meristem formation in vegetative development. Plant Cell, 9, 10011010.
  • Kieffer, M., Stern, Y., Cook, H., Clerici, E., Maulbetsch, C., Laux, T. and Davies, B. (2006) Analysis of the transcription factor WUSCHEL and its functional homologue in Antirrhinum reveals a potential mechanism for their roles in meristem maintenance. Plant Cell, 18, 560573.
  • Laux, T., Mayer, K.F.X., Berger, J. and Jurgens, G. (1996) The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development, 122, 8796.
  • Leibfried, A., To, J.P.C., Busch, W., Stehling, S., Kehle, A., Demar, M., Kieber, J.J. and Lohmann, J.U. (2005) WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators. Nature, 438, 11721175.
  • Li, X., Mo, X.R., Shou, H.X. and Wu, P. (2006) Cytokinin-mediated cell cycling arrest of pericycle founder cells in lateral root initiation of Arabidopsis. Plant Cell Physiol. 47, 11121123.
  • Lohmann, J.U., Hong, R.L., Hobe, M., Busch, M.A., Parcy, F., Simon, R. and Weigel, D. (2001) A molecular link between stem cell regulation and floral patterning in Arabidopsis. Cell, 105, 793803.
  • Long, J.A., Woody, S., Poethig, S., Meyerowitz, E.M. and Barton, K. (2002) Transformation of shoots into roots in Arabidopsis embryos mutant at the TOPLESS locus. Development, 129, 27972806.
  • Mayer, K.F.X., Schoof, H., Haecker, A., Lenhard, M., Jurgens, G. and Laux, T. (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell, 95, 805815.
  • McElver, J., Tzafrir, I., Aux, G. et al. (2001) Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana. Genetics, 159, 17511763.
  • McSteen, P. and Leyser, O. (2005) Shoot branching. Annu. Rev. Plant Biol. 56, 353374.
  • Peterson, R.L. (1970) Bud development at the root apex of Ophioglossum petiolatum. Phytomorphology, 20, 183190.
  • R Development Core Team. (2011) R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
  • Reddy, G.V. and Meyerowitz, E.M. (2005) Stem-cell homeostasis and growth dynamics can be uncoupled in the Arabidopsis shoot apex. Science, 310, 663667.
  • Scheres, B. (2007) Stem-cell niches: nursery rhymes across kingdoms. Nat. Rev. Mol. Cell Biol. 8, 345354.
  • Schmulling, T., Schafer, S. and Romanov, G. (1997) Cytokinins as regulators of gene expression. Physiol. Plant. 100, 505519.
  • Sena, G., Wang, X.N., Liu, H.Y., Hofhuis, H. and Birnbaum, K.D. (2009) Organ regeneration does not require a functional stem cell niche in plants. Nature, 457, 11501153.
  • Skoog, F. (1950) Chemical regulation of growth and organ formation in plant tissues. Annee Biol. 54, 545562.
  • Skoog, F. and Miller, C. (1957) Chemical regulation of growth and organ formation in plant tissues cultured in vitro. Symp. Soc. Exp. Biol. 54, 118130.
  • Smith, Z.R. and Long, J.A. (2010) Control of Arabidopsis apical-basal embryo polarity by antagonistic transcription factors. Nature, 464, 423U121.
  • Smyth, G.K. (2005) Limma: linear models for microarray data. In Bioinformatics and Computational Biology Solutions Using R and Bioconductor (Gentleman, R.C., Carey, V.J., Dudoit, S., Irizarry, R. and Huber, W., eds). New York, NY: Springer, pp. 397420.
  • Song, S.K., Lee, M.M. and Clark, S.E. (2006) POL and PLL1 phosphatases are CLAVATA1 signaling intermediates required for Arabidopsis shoot and floral stem cells. Development, 133, 46914698.
  • Sonoda, Y., Yao, S.G., Sako, K., Sato, T., Kato, W., Ohto, M., Ichikawa, T., Matsui, M., Yamaguchi, J. and Ikeda, A. (2007) SHA1, a novel RING finger protein, functions in shoot apical meristem maintenance in Arabidopsis. Plant J. 50, 586596.
  • Spencer-Barreto, M.M. and Duhoux, E. (1994) Root-to-shoot primordium conversion on Sesbania rostrata Brem stem explants. J. Exp. Bot. 45, 18511857.
  • Steeves, T.A. and Sussex, I.M. (1989) Patterns in Plant Development, 2nd edn. New York, NY: Cambridge University Press.
  • Sugimoto, K., Jiao, Y.L. and Meyerowitz, E.M. (2010) Arabidopsis regeneration from multiple tissues occurs via a root development pathway. Dev. Cell, 18, 463471.
  • Sussex, I.M., Godoy, J.A., Kerk, N.M., Laskowski, M.J., Nusbaum, H.C., Welsch, J.A. and Williams, M.E. (1995) Cellular and molecular events in a newly organizing lateral root meristem. Philos. Trans. R. Soc. Lond. B Biol. Sci. 350, 3943.
  • Szemenyei, H., Hannon, M. and Long, J.A. (2008) TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science, 319, 13841386.
  • To, J.P.C., Haberer, G., Ferreira, F.J., Deruere, J., Mason, M.G., Schaller, G.E., Alonso, J.M., Ecker, J.R. and Kieber, J. (2004) Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. Plant Cell, 16, 658671.
  • Werner, T., Motyka, V., Laucou, V., Smets, R., Van Onckelen, H. and Schmulling, T. (2003) Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Plant Cell, 15, 25322550.
  • Winter, D., Vinegar, B., Nahal, H., Ammar, R., Wilson, G.V. and Provart, N.J. (2007) An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets. PLoS ONE, 2(8): e718. doi:10.1371/journal.pone.0000718.
  • Yadav, R.K., Girke, T., Pasala, S., Xie, M.T. and Reddy, V. (2009) Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc. Natl Acad. Sci. USA, 106, 49414946.
  • Yadav, R.K., Perales, M., Gruel, J., Girke, T., Jonsson, H. and Reddy, G.V. (2011) WUSCHEL protein movement mediates stem cell homeostasis in the Arabidopsis shoot apex. Genes Dev. 25, 20252030.
  • Zhou, D., Zhou, X., Ling, Y., Zhang, Z. and Su, Z. (2010) agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res. 38, 6470.
  • Zuo, J.R., Niu, Q.W., Ikeda, Y. and Chua, N.H. (2002) Marker-free transformation: increasing transformation frequency by the use of regeneration- promoting genes. Curr. Opin. Biotechnol. 13, 173180.