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tpj12104-sup-0001-FigS1.pptxapplication/pptx53KFigure S1. Length distribution of VS16 454 expressed sequence tags.
tpj12104-sup-0002-FigS2.pptxapplication/pptx1924KFigure S2. Switchgrass genotype AP13 (a, b) and VS16 (c, d) node cultures on media with antibiotics and fungicide.
tpj12104-sup-0003-FigS3.pptxapplication/pptx3006KFigure S3. Homology of switchgrass AP13 unitranscripts compared with the reference genome.
tpj12104-sup-0004-FigS4.pptxapplication/pptx236KFigure S4. Assembly of subsets of expressed sequence tags and pooling strategy for integrated switchgrass unitranscripts.
tpj12104-sup-0005-FigS5.pptxapplication/pptx132KFigure S5. BlastN E-values of integrated switchgrass unitranscripts versus annotated foxtail millet transcript sequences
tpj12104-sup-0006-FigS6.pptxapplication/pptx243KFigure S6. Functional annotation of integrated switchgrass unitranscripts using the Conserved Domain Database.
tpj12104-sup-0007-FigS7.pptxapplication/pptx937KFigure S7. Switchgrass seed germination and time points for sampling.
tpj12104-sup-0008-FigS8.pptxapplication/pptx3699KFigure S8. Stages of switchgrass inflorescence development.
tpj12104-sup-0009-FigS9.pptxapplication/pptx1050KFigure S9. Dissection of switchgrass vascular fiber from an internode (a) and a magnified view (b).
tpj12104-sup-0010-FigS10.pptxapplication/pptx173KFigure S10. Signal intensity distribution of Affymetrix probe sets.
tpj12104-sup-0011-FigS11.pptxapplication/pptx70KFigure S11. Number of probe sets detecting transcripts from various switchgrass organs.
tpj12104-sup-0012-Legend.docxWord document107K 
tpj12104-sup-0013-TableS1.xlsxapplication/msexcel13KTable S1. Microbial sequence contamination and estimation of 454 expressed sequence tag-derived consensus sequences.
tpj12104-sup-0014-TableS2.xlsxapplication/msexcel10KTable S2. 454 expressed sequence tag assembly of VS16 with different programs.
tpj12104-sup-0015-TableS3.xlsxapplication/msexcel11KTable S3. Newbler assembly metrics of 454 expressed sequence tags of VS16 with different parameter settings.
tpj12104-sup-0016-TableS4.xlsxapplication/msexcel11KTable S4. Expressed sequence tag assembly and sequence resources used for the switchgrass unique transcript curation.
tpj12104-sup-0017-TableS5.xlsxapplication/msexcel10KTable S5. Estimated transcript and transcriptome coverage of switchgrass unitranscripts.
tpj12104-sup-0018-TableS6.xlsxapplication/msexcel11KTable S6. Alamo-AP13 ×  Alamo (non-AP13) tissues included in the gene expression atlas.
tpj12104-sup-0019-TableS7.xlsxapplication/msexcel11KTable S7. Summary of transcript sequence sources of probe sets and present/absent in the switchgrass gene atlas.
tpj12104-sup-0020-TableS8.xlsxapplication/msexcel55KTable S8. Most stably expressed switchgrass genes.
tpj12104-sup-0021-TableS9.xlsxapplication/msexcel10674KTable S9. Organ-enhanced genes.
tpj12104-sup-0022-TableS10.xlsxapplication/msexcel309KTable S10. Putative phenylpropanoid–monolignol biosynthesis genes and normalized average transcript levels.
tpj12104-sup-0023-TableS11.xlsxapplication/msexcel65KTable S11. Candidate phenylpropanoid–monolignol biosynthesis pathway genes in switchgrass and expression in 24 organs or tissues.

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