SEARCH

SEARCH BY CITATION

References

  • Abe, A., Kosugi, S., Yoshida, K. et al. (2012a) Genome sequencing reveals agronomically-important loci in rice from mutant populations. Nat. Biotechnol. 30, 174178.
  • Abe, A., Takagi, H., Fujibe, T., Aya, K., Kojima, M., Sakakibara, H., Uemura, A., Matsuoka, M. and Terauchi, R. (2012b) OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice. Theor. Appl. Genet. 125, 647657.
  • Asaga, K. (1981) A procedure for evaluating field resistance to blast in rice varieties. J. Cent. Agric. Exp. Stn. 35, 51138.
  • Ashikari, M. and Matsuoka, M. (2006) Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends Plant Sci. 11, 344350.
  • Austin, R.S., Vidaurre, D., Stamatiou, G. et al. (2011) Next-generation mapping of Arabidopsis genes. Plant J. 67, 715725.
  • Basten, C.J., Weir, B.S. and Zeng, Z.B. (2005) QTL Cartographer, Version 1.17: A Reference Manual and Tutorial for QTL Mapping. Raleigh: North Carolina State University.
  • Darvasi, A. and Soller, M. (1994) Selective DNA pooling for determination of linkage between a molecular marker and a quantitative trait locus. Genetics, 138, 13651373.
  • David, T., Christian, B., Jason, H. and Belinda, L.B. (2011) Global food demand and the sustainable intensification of agriculture. Proc. Natl Acad. Sci. USA, 108, 2026020264.
  • Ehrenreich, M.I., Torabi, N., Jia, Y., Kent, J., Martis, S., Shapiro, A.J., Gresham, D., Caudy, A.A. and Kruglyak, L. (2010) Dissection of genetically complex traits with extremely large pools of yeast segregants. Nature, 446, 10391042.
  • Falconer, D.S. and Mackay, T.F.C. (1996) Introduction to Quantitative Genetics, 4th edn. London: Prentice Hall.
  • Fujino, K., Sekiguchi, H., Matsuda, Y., Sugimoto, K., Ono, K. and Yano, M. (2008) Molecular identification of a major quantitative trait locus, qLTG3–1, controlling low-temperature germinability in rice. Proc. Natl Acad. Sci. USA, 105, 1262312628.
  • Giovannoni, J.J., Wing, R.A., Ganal, M.W. and Tanksley, S.D. (1991) Isolation of molecular markers from specific chromosome intervals using DNA pools from existing mapping populations. Nucleic Acids Res. 19, 65536558.
  • Godfray, H.C.J. (2010) Food security: The challenge of feeding 9 billion people. Science, 327, 812818.
  • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 17541760.
  • Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G. and Durbin, R.; 1000.Genome.Project.Data.Processing.Subgroup. (2009) The sequence alignment/map format and samtools. Bioinformatics, 25, 20782079.
  • Magwene, P.M., Willis, J.H. and Kelly, J.K. (2011) The statistics of bulk segregant analysis using next generation sequencing. PLoS Comput. Biol. 7, e1002255.
  • Mansur, L.M., Orf, J. and Lark, K.G. (1993) Determining the linkage of quantitative trait loci to RFLP markers using extreme phenotypes of recombinant inbreds of soybean (Glycine max L. Merr.). Theor. Appl. Genet. 86, 914918.
  • Michelmore, R.W., Paran, I. and Kesseli, R.V. (1991) Identification of markers linked to disease resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl Acad. Sci. USA, 88, 98289832.
  • Miura, K., Lin, S.Y., Yano, M. and Nagamine, T. (2001) Mapping Quantitative Trait Loci Controlling Low Temperature Germinability in Rice(Oryza sativa L.). Breed. Sci. 51, 293299.
  • Mokry, M., Nijman, I.J., van Dijken, A., Benjamins, R., Heidstra, R., Scheres, B. and Cuppen, E. (2011) Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach. BMC Genomics, 12, 256.
  • Parts, L., Cubillos, A.F., Warringer, J. et al. (2011) Revealing the genetic structure of a trait by sequencing a population under selection. Genome Res. 21, 11311138.
  • Schneeberger, K., Ossowski, S., Lanz, C., Juul, T., Petersen, A.H., Nielsen, K.L., Jorgensen, J.-E., Weigel, D. and Andersen, S.U. (2009) SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat. Methods, 6, 550551.
  • Swinnen, S., Schaerlaekens, K., Pais, T. et al. (2012) Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis. Genome Res. 22, 975984.
  • Trick, M., Adamski, N.M., Mugford, S.G., Jiang, C.-C., Febrer, M. and Uauy, C. (2012) Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploidy wheat. BMC Plant Biol. 12, 14.
  • Wenger, W.J., Schwartz, K. and Sherlock, G. (2010) Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. PLoS Genet. 6, e1000942.
  • Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18, 65316535.
  • Yano, M. (2001) Genetic and molecular dissection of naturally occurring variation. Curr. Opin. Plant Biol. 4, 130135.
  • Yano, K., Takashi, T., Nagamatsu, S., Kojima, M., Sakakibara, H., Kitano, H., Matsuoka, M. and Aya, K. (2012) Efficacy of microarray profiling data combined with QTL mapping for the identification of a QTL gene controlling the initial growth rate in rice. Plant Cell Physiol. 53, 729739.