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tpj12204-sup-0001-FigsS1-S3.docxWord document5308K

Figure S1. Comparison of transcriptomes of three bioreplicates each of WT, rsh mutant and ANP4-F2.

Figure S2. Phenotypes of seedlings used in this study and summary data from differential gene expression tested by microarray analysis.

Figure S3. Comparative expression of genes from selected families with ≥twofold differential expression ( 0.05) in at least one of the three comparisons made between three samples i.e. WT, rsh mutant and ANP4-F2, using microarray analysis of seedling.

tpj12204-sup-0002-TablesS1-S10.xlsxapplication/msexcel131K

Table S1. Top 50 (putative) genes down-regulated in the rsh mutant versus WT, and their expression in the ANP4-F2 versus the rsh mutant, by microarray analysis of seedlings.

Table S2. Top 50 (putative) genes up-regulated in the rsh mutant versus WT, and their expression in the ANP4-F2 versus the rsh mutant, by microarray analysis of seedlings.

Table S3. Top 50 (putative) genes down-regulated in the ANP4-F2 versus WT, by microarray analysis of seedlings.

Table S4. Top 50 (putative) genes up-regulated in ANP4-F2 versus WT, by microarray analysis of seedlings.

Table S5. Abbreviations, full names/descriptions of (putative) gene products.

Table S6. EXT, PRP, AGP, PER, EXP/EXPL and P4H (putative) genes showing ≥twofold differential expression in at least one of the following three comparisons (and reverse comparisons) of WT, the rsh mutant, and ANP4-F2 seedlings, by microarray analysis (also see Figure S3).

Table S7. Expression comparisons of all 65 EXT and 18 PRP, and selected 10 AGP, 15 PER, 8 EXP/EXPL, 3 P4H, and 14 DBP and three kinase encoding (putative) genes in WT, rsh mutant and ANP4-F2, by qRT-PCR analysis of seedlings (also see Figure 2).

Table S8. Expression comparisons of ANP4-F3 and ANP10-F3 with WT-2 (next generation WT), for all 65 EXT and 18 PRP, and for selected 10 AGP, 15 PER, 8 EXP/EXPL, 3 P4H, and 14 DBP and three kinase encoding (putative) genes, by qRT-PCR analysis of seedlings (also see Figure 4).

Table S9. Amino acid composition as average mole % of total amino acids in cell walls of seedling roots from WT, rsh mutant, ANP4-F2 and ANP10-F2.

Table S10. Primers used for qRT-PCR, and PCR (last two lines).

tpj12204-sup-0003-DataS1-S2.docxWord document111K

Data S1. Experimental procedures for supporting information.

Data S2. References for supporting information.

tpj12204-sup-0004-Legends.docxWord document125K 

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