tpj12250-sup-0001-FigS1.TIFFTIFF image47KFigure S1. Phenotype of seeds.
tpj12250-sup-0002-FigS2.TIFFTIFF image711KFigure S2. Comparison of variant detection methods.
tpj12250-sup-0003-FigS3.TIFFTIFF image555KFigure S3. Comparison of gene classifications resulting from all three variant detection methods.
tpj12250-sup-0004-FigS4.tiffTIFF image2839KFigure S4. Comparison of tissue support for all genes classified as from layer L1 or layers L2/L3.
tpj12250-sup-0005-FigS5.tiffTIFF image35703KFigure S5. Parental-origin allele-specific expression values for all Sanger-sequenced genes.
tpj12250-sup-0006-FigS6.tiffTIFF image2572KFigure S6. Gene Ontology graph of over-represented terms for layer L1 genes.
tpj12250-sup-0007-FigS7.tiffTIFF image1508KFigure S7. Gene Ontology graph of over-represented terms for layers L2/L3 genes.
tpj12250-sup-0008-FigS8.TIFFTIFF image48KFigure S8. Water loss.
tpj12250-sup-0013-FigureLegends.docxWord document17K 
tpj12250-sup-0009-TableS1-S3-TableS7-S8.docxWord document28K

Table S1. Levels of ABA in water-stressed leaves.

Table S2. Results from mapping of SOLiD reads for all nine libraries.

Table S3. Results from variant detection.

Table S4. Parental-origin allele-specific expression values in all samples.

Table S5. List of genes classified as layer L1, either specific or related.

Table S6. List of genes classified as layers L2/L3, either specific or related.

Table S7. Comparison of layer L1 specificity from Sanger sequencing with their Next Generation Sequencing based classification.

Table S8. Sequences of primers used.

tpj12250-sup-0015-SupportingMethods.docxWord document42KMethods S1. Supporting methods.
tpj12250-sup-0014-SupplementReference.docxWord document15K 

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