Figure S1. PCR validation of the structural variations detected for the heterozygous diploid genome of sweet orange.

Figure S2. Box plot of expression level of whole-genome genes in four tissues (callus, flower, leaf and fruit) and three mixtures.

Figure S3. Differential expression analysis of genes greatly affected by SNPs and InDels across four tissues.

tpj12254-sup-0002-TableS1.pdfapplication/PDF16KTable S1. Summary statistics for SVs on nine chromosomes.
tpj12254-sup-0003-TableS2.xlsxapplication/msexcel19KTable S2. PCR primer information for SVs detected in the heterozygous diploid genome of sweet orange.
tpj12254-sup-0004-TableS3.pdfapplication/PDF25KTable S3. Differentially expressed genes across four tissues.
tpj12254-sup-0005-TableS4.xlsxapplication/msexcel526KTable S4. Highly tissue-specifically expressed genes greatly affected by SNPs and InDels.
tpj12254-sup-0006-TableS5.xlsxapplication/msexcel25KTable S5. RPKM values for the expression level of genes in large-deletion regions in four tissues and three mixtures.
tpj12254-sup-0007-TableS6.xlsxapplication/msexcel25KTable S6. Genetic origin of hemizygous genes.

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