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tpj12292-sup-0001-Legends.docxWord document25K 
tpj12292-sup-0002-FigS1.pdfapplication/PDF18KFigure S1. Transcript accumulation of clock genes under diurnal conditions.
tpj12292-sup-0003-FigS2.pdfapplication/PDF515KFigure S2. MapMan pathways show a vast transcriptomic reprogramming in tic-2.
tpj12292-sup-0004-FigS3.pdfapplication/PDF15KFigure S3. Transcript accumulation of starch metabolism genes under diurnal conditions.
tpj12292-sup-0005-FigS4.pdfapplication/PDF17KFigure S4. The tic-2 starch excess phenotype is independent of growth stage and growing conditions.
tpj12292-sup-0006-FigS5.pdfapplication/PDF15KFigure S5. Transcript accumulation of drought stress-related genes under diurnal conditions.
tpj12292-sup-0007-FigS6.pdfapplication/PDF16KFigure S6. Venn diagrams of tic-2 dataset with other available microarray datasets.
tpj12292-sup-0008-FigS7.pdfapplication/PDF11KFigure S7. Ascorbate antioxidant pools of tic-2 are similar to those of the wild type in soil-grown rosette plants.
tpj12292-sup-0009-FigS8.pdfapplication/PDF13KFigure S8. Transcript accumulation of anti-oxidation-related genes under diurnal conditions.
tpj12292-sup-0010-FigS9.pdfapplication/PDF689KFigure S9. The tic metabolite profile at dusk revealed that alteration of amino acid metabolism is independent of the time of day.
tpj12292-sup-0011-FigS10.pdfapplication/PDF58KFigure S10. Amounts of cysteine and derived intermediaries of glutathione synthesis and other amino acids are altered in tic-2 compared with the wild type.
tpj12292-sup-0012-FigS11.pdfapplication/PDF14KFigure S11. The NAD and NADP levels in their reduced and oxidized states were quantified in tic-2 and wild-type seedlings and in soil-grown rosette plants.
tpj12292-sup-0013-FigS12.pptxapplication/mspowerpoint204KFigure S12. The transcriptome of tic-2 affects mainly expression of genes that have a phase or peak of expression toward dawn or dusk.
tpj12292-sup-0014-FigS13.pptxapplication/mspowerpoint263KFigure S13. The transcriptome of tic-2 affects mainly expression of genes that have a phase or peak of expression toward dawn or dusk.
tpj12292-sup-0015-FigS14.pptxapplication/mspowerpoint145KFigure S14. tic-2 transcriptome displays major effects on genes whose phase of expression is toward dawn and dusk.
tpj12292-sup-0016-FigS15.pptxapplication/mspowerpoint232KFigure S15. tic-2 transcriptome displays major effects on genes whose phase of expression is toward dawn and dusk.
tpj12292-sup-0017-MethodS1-S3.docxWord document44K

Method S1. Microarray samples and ATH1 hybridization.

Method S2. Microarray data analysis and mining.

Method S3. Microarray data meta-analysis.

tpj12292-sup-0017-TableS1.docxWord document25KTable S1. Genes misexpressed in tic organized by groups of biological significance to the study.
tpj12292-sup-0018-TableS2.docxWord document18KTable S2. Transcription factors are widely misexpressed in the tic transcriptome.
tpj12292-sup-0019-TableS3.docxWord document18KTable S3. Gene Ontology classification of the tic microarray profile.
tpj12292-sup-0020-TableS4.docxWord document20KTable S4. Gene Ontology enrichment.
tpj12292-sup-0021-TableS5.docxWord document23KTable S5. Metabolic pathways affected in tic.
tpj12292-sup-0022-TableS6.docxWord document19KTable S6. tic dataset overlaps with ABA, the circadian clock, and other stress-related microarray datasets.
tpj12292-sup-0023-TableS7.docxWord document18KTable S7. Primer sequences.
tpj12292-sup-0024-TableS8.xlsapplication/msexcel44KTable S8. Overview of the metabolite reporting list.
tpj12292-sup-0025-TableS9.xlsapplication/msexcel196KTable S9. tic-2 metabolite profile.
tpj12292-sup-0026-TableS10.docxWord document17KTable S10. tic-2 full microarray dataset affects genes whose phase of expression is towards dawn and dusk.
tpj12292-sup-0027-TableS11.docxWord document17KTable S11. tic-2 overexpressed genes mainly have a phase of expression near dusk or dawn.
tpj12292-sup-0028-TableS12.docxWord document17KTable S12. tic-2 down-regulated genes are those whose phase of expression is before dawn or the early hours of the light period.
tpj12292-sup-0029-TableS13.docxWord document17KTable S13. tic-2 microarray dataset affects genes whose phase of expression is towards dawn and dusk under constant light conditions (LL).

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