Figure S1. Sequencing and mapping the moss epigenome.

Figure S2. Example of epigenomic profile visualized using a genome browser.

Figure S3. Genomic distribution of chromatin marks.

Figure S4. Diagram of the assignment of UTR and promoter regions to the gene models.

Figure S5. Validation of deep-seq result on selected genes.

Figure S6. Gene-wide distribution of histone modifications.

Figure S7. Global organization of histone modification into chromatin states in P. patens.

Figure S8. Gene Ontology (GO bias) of genes in CS #5 (H3K4me3-H3K9Ac-H3K27Ac) that lose the H3K27Ac mark during the developmental transition from protonema to gametophores.

Figure S9. Word cloud with the enriched GO terms of the genes that toggle from CS #5 (H3K4me3-H3K9Ac-H3K27Ac) in protonema to CS #6 (H3K4me3-H3K9Ac-H3K27me3) in gametophores.

Figure S10. Boxplots of the statistical testing of histone dynamics.

Figure S11. Genome-wide histone modification dynamics during developmental transition (a) and dehydration response (b).

Figure S12. Distribution of q-values for stress/developmental DEGs.

Figure S13. Phenotype of non-stressed and dehydrated gametophores.

Figure S14. Test of antibody cross reactivity with a histone peptide array.

tpj12542-sup-0002-TableS1.xlsxapplication/msexcel43KTable S1. Genome-wide identification of significantly enriched histone modification regions.
tpj12542-sup-0003-TableS2.xlsxapplication/msexcel9KTable S2. Sonication fragment size of the libraries.
tpj12542-sup-0004-TableS3.xlsxapplication/msexcel12KTable S3. Histone-modified enriched regions identified by MACS and SICER.
tpj12542-sup-0005-TableS4.xlsxapplication/msexcel10KTable S4. Comparison of the different controls for peak calling using MACS.
tpj12542-sup-0006-TableS5.xlsxapplication/msexcel42KTable S5. Primers used for q-PCR.
tpj12542-sup-0007-TableS6.xlsxapplication/msexcel189KTable S6. Observed and expected numbers of CS.
tpj12542-sup-0008-TableS7.docWord document397KTable S7. DEG list.
tpj12542-sup-0009-TableS8.xlsxapplication/msexcel16KTable S8. Gene Ontology (GO) bias analysis within CS of developmental and dehydrated DEG.
tpj12542-sup-0010-TableS9.docWord document141KTable S9. Annotation of the 125 drought induced genes that change CS during development.
tpj12542-sup-0011-TableS10.xlsxapplication/msexcel39KTable S10. List of validated antibodies used for ChIP.
tpj12542-sup-0012-TableS11.xlsapplication/msexcel33KTable S11. Accession numbers of the different libraries deposited in the Sequence Read Archive (SRA) at NCBI.
tpj12542-sup-0013-Methods.docWord document62KData S1. Methods.
tpj12542-sup-0014-Legends.docWord document45K 

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