Annals of the New York Academy of Sciences

Cover image for Vol. 1137 Circulating Nucleic Acids in Plasma and Serum V

August 2008

Volume 1137 Circulating Nucleic Acids in Plasma and Serum V

Pages xii–xii, 1–345

  1. Preface

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Preface (page xii)

      Peter B. Gahan and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.051

  2. Original Articles

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
  3. Part I. Basic Research

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Metabolic DNA as the Origin of Spontaneously Released DNA? (pages 7–17)

      Peter B. Gahan, Philippe Anker and Maurice Stroun

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.046

    2. Circulating DNA : Its Origin and Fluctuation (pages 18–26)

      Maniesh Van Der Vaart and Piet J. Pretorius

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.022

    3. The Effect of Protein Transport Inhibitors on the Production of Extracellular DNA (pages 31–35)

      Evgeniy S. Morozkin, Tatyana I. Babochkina, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.026

    4. Binding and Penetration of Methylated DNA into Primary and Transformed Human Cells (pages 36–40)

      Tatyana E. Skvortsova, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.033

    5. Extracellular DNA Fragments : Factors of Stress Signaling between X-Irradiated and Nonirradiated Human Lymphocytes (pages 41–46)

      Aleksei V. Ermakov, Svetlana V. Kostyuk, Marina S. Konkova, Natalya A. Egolina, Elena M. Malinovskaya and Natalya N. Veiko

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.024

    6. Isolation and Sequencing of Short Cell-Surface-Bound DNA (pages 47–50)

      Vera S. Mal'shakova, Dmitry V. Pyshnyi, Alexander A. Bondar, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.018

    7. Deamination of Adenosines in Extracellular RNA Spontaneously Internalized by Human Cells (pages 51–57)

      Elena V. Kuligina, Oksana V. Vratskih, Dmitry V. Semenov, Vera A. Matveeva and Vladimir A. Richter

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.036

    8. Circulating Nucleic Acids in the Assessment of Endogenous Growth Hormone Production (pages 58–65)

      H. Thakkar, A.N. Butt, J. Powrie, R. Holt and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.003

  4. Part II. Methodology

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Transrenal Nucleic Acids: From Proof of Principle to Clinical Tests : Problems and Solutions (pages 73–81)

      Hovsep S. Melkonyan, W. John Feaver, Erik Meyer, Vladimir Scheinker, Eugene M. Shekhtman, Zhenghan Xin and Samuil R. Umansky

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.015

    2. Removal of High-Molecular-Weight DNA by Carboxylated Magnetic Beads Enhances the Detection of Mutated K-ras DNA in Urine (pages 82–91)

      Ying-Hsiu Su, Janet Song, Zhili Wang, Xiao-He Wang, Mengjun Wang, Dean E. Brenner and Timothy M. Block

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.019

    3. A Method for Characterization of Total Circulating DNA (pages 92–97)

      Maniesh Van Der Vaart and Piet J. Pretorius

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.031

    4. Isolation and Extraction of Circulating Tumor DNA from Patients with Small Cell Lung Cancer (pages 98–107)

      Ruth E. Board, Victoria S. Williams, Lucy Knight, Jacqueline Shaw, Alastair Greystoke, Malcolm Ranson, Caroline Dive, Fiona H. Blackhall and Andrew Hughes

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.020

    5. Stability of β-Actin mRNA in Plasma (pages 108–111)

      N.C. Holford, H.S. Sandhu, H. Thakkar, A.N. Butt and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.006

    6. Normalization of Circulating Nucleic Acid Results : Should We Use β-Actin? (pages 112–118)

      N.C. Holford, A. Ramoutar, A.N. Butt and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.000

    7. Splicing by Exon Exclusion Impaired by Artificial Box C/D RNA Targeted to Branch-Point Adenosine (pages 119–124)

      Dmitry V. Semenov, Oksana V. Vratskih, Elena V. Kuligina and Vladimir A. Richter

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.037

    8. Optimization of Purification of Human Cell-Free mRNA from Plasma (pages 125–129)

      Tadeja Dovc-Drnovsek, Barbara Emersic, Primoz Rozman, Darko Cerne and Jana Lukac-Bajalo

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.028

    9. Fragments of Noncoding RNA in Plasma of Human Blood (pages 130–134)

      Dmitry V. Semenov, Dmitry N. Baryakin, Tatyana P. Kamynina, Elena V. Kuligina and Vladimir A. Richter

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.030

    10. An Improved Method for the Isolation of Free-Circulating Plasma DNA and Cell-Free DNA from Other Body Fluids (pages 135–139)

      Christoph Kirsch, Sabine Weickmann, Bernd Schmidt and Michael Fleischhacker

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.035

  5. Part III. Fetal Nucleic Acids

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Phenotype and mRNA Expression of Syncytiotrophoblast Microparticles Isolated from Human Placenta (pages 144–147)

      Belinda Kumpel, May-Jean King, Suren Sooranna, Dave Jackson, Jane Eastlake, Rong Cheng and Mark Johnson

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.017

    2. Fetal Sex Identification in Maternal Plasma by Means of Short Tandem Repeats on Chromosome X (pages 148–156)

      Gennaro Vecchione, Michela Tomaiuolo, Michelina Sarno, Donatella Colaizzo, Rosella Petraroli, Maria Matteo, Pantaleo Greco, Elvira Grandone and Maurizio Margaglione

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.038

    3. A New Y Chromosome Marker for Noninvasive Fetal Gender Determination (pages 157–161)

      Olga B. Vainer, Aleksey V. Katokhin, Sergey M. Kustov, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.041

  6. Part IV. Circulating Nucleic Acids and Cancer

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. DNA Integrity in Plasma and Serum of Patients with Malignant and Benign Diseases (pages 162–170)

      Stefan Holdenrieder, Alexander Burges, Oliver Reich, Fritz W. Spelsberg and Petra Stieber

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.013

    2. Quantification of LINE1 in Circulating DNA as a Molecular Biomarker of Breast Cancer (pages 171–174)

      Eiji Sunami, Anh-Thu Vu, Sandy L. Nguyen, Armando E. Giuliano and Dave S. B. Hoon

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.011

    3. Effect of Adjuvant Chemotherapy on Integrity of Free Serum DNA in Patients with Breast Cancer (pages 175–179)

      Ugur Deligezer, Yesim Eralp, Elif Z. Akisik, Ebru E. Akisik, Pinar Saip, Erkan Topuz and Nejat Dalay

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.010

    4. Clinical Relevance of Circulating Nucleosomes in Cancer (pages 180–189)

      Stefan Holdenrieder, Dorothea Nagel, Andreas Schalhorn, Volker Heinemann, Ralf Wilkowski, Joachim Von Pawel, Hannelore Raith, Knut Feldmann, Andreas E. Kremer, Susanne Müller, Sandra Geiger, Gerhard F. Hamann, Dietrich Seidel and Petra Stieber

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.012

    5. Detection and Monitoring of Cell-Free DNA in Blood of Patients with Colorectal Cancer (pages 190–196)

      Heidi Schwarzenbach, Jan Stoehlmacher, Klaus Pantel and Eray Goekkurt

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.025

    6. Detection of Mutated K-ras DNA in Urine, Plasma, and Serum of Patients with Colorectal Carcinoma or Adenomatous Polyps (pages 197–206)

      Ying-Hsiu Su, Mengjun Wang, Dean E. Brenner, Pamela A. Norton and Timothy M. Block

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.027

    7. Integrity of Cell-Free Plasma DNA in Patients with Lung Cancer and Nonmalignant Lung Disease (pages 207–213)

      Bernd Schmidt, Sabine Weickmann, Christian Witt and Michael Fleischhacker

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.034

    8. Cell-Surface-Bound Circulating DNA as a Prognostic Factor in Lung Cancer (pages 214–217)

      Svetlana N. Tamkovich, Nikolai V. Litviakov, Olga E. Bryzgunova, Aleksey Yu. Dobrodeev, Elena Yu. Rykova, Sergey A. Tuzikov, Aleksandr A. Zav'ialov, Valentin V. Vlassov, Nadezhda V. Cherdyntseva and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.042

    9. Deoxyribonuclease Activity and Circulating DNA Concentration in Blood Plasma of Patients with Prostate Tumors (pages 218–221)

      Anna V. Cherepanova, Svetlana N. Tamkovich, Olga E. Bryzgunova, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.016

    10. Methylation-Specific Sequencing of GSTP1 Gene Promoter in Circulating/Extracellular DNA from Blood and Urine of Healthy Donors and Prostate Cancer Patients (pages 222–225)

      Olga E. Bryzgunova, Evgeniy S. Morozkin, Sergey V. Yarmoschuk, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.039

    11. Circulating DNA in the Blood of Gastric Cancer Patients (pages 226–231)

      Elena V. Kolesnikova, Svetlana N. Tamkovich, Olga E. Bryzgunova, Petr I. Shelestyuk, Valentina I. Permyakova, Valentin V. Vlassov, Aleksandr S. Tuzikov, Pavel P. Laktionov and Elena Y. Rykova

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.009

    12. Methylation-Based Analysis of Circulating DNA for Breast Tumor Screening (pages 232–235)

      Elena Y. Rykova, Galina A. Tsvetovskaya, Galina I. Sergeeva, Valentin V. Vlassov and Pavel P. Laktionov

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.021

  7. Part V. Circulating Nucleic Acids and Other Diseases

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Effect of Hypoxia on Circulating Levels of Retina-Specific Messenger RNA in Type 2 Diabetes Mellitus (pages 243–252)

      Amy Wong, Simon Merritt, Asif N. Butt, Adrian Williams and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.001

    2. Retina-Specific mRNA in the Assessment of Diabetic Retinopathy (pages 253–257)

      Z. Shalchi, H.S. Sandhu, A.N. Butt, S. Smith, J. Powrie and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.008

    3. Measurement of Circulating Neuron-Specific Enolase mRNA in Diabetes Mellitus (pages 258–263)

      H. S. Sandhu, A. N. Butt, J. Powrie and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.044

    4. Hepatitis B Virus X-DNA : A Serum Marker for Early Detection of Resistance Development during Lamivudine Therapy (pages 264–272)

      Wei Zhang, Yan-Hong Li, Shao-Jun Zhu, Yan Zhang, Li Gong, Shu-Mei Wang, Hans Jörg Hacker, Claus Hobe Schröder, Dong-Sheng Cheng and Ying-Ming Feng

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.032

    5. Hypertension and Circulating mRNA for 11β-Hydroxysteroid Dehydrogenase Type II (pages 290–295)

      S. Agalou, A. N. Butt, Phil Chowienczyk and R. Swaminathan

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.005

    6. Cell-Free Plasma DNA during Peritoneal Dialysis and Hemodialysis and in Patients with Chronic Kidney Disease (pages 296–301)

      Marie Korabecna, Sylvie Opatrna, Jan Wirth, Kamila Rulcova, Jaromir Eiselt, Frantisek Sefrna and Ales Horinek

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.014

  8. Index of Contributors

    1. Top of page
    2. Preface
    3. Original Articles
    4. Part I. Basic Research
    5. Part II. Methodology
    6. Part III. Fetal Nucleic Acids
    7. Part IV. Circulating Nucleic Acids and Cancer
    8. Part V. Circulating Nucleic Acids and Other Diseases
    9. Index of Contributors
    1. Index of Contributors (pages 343–345)

      Article first published online: 16 SEP 2008 | DOI: 10.1196/annals.1448.auindex_1

SEARCH

SEARCH BY CITATION