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  • 1
    Balashov, S. P., E. S. Imasheva, V. A. Boichenko, J. Antón, J. M. Wang and J. K. Lanyi (2005) Xanthorhodopsin: A proton pump with a light-harvesting carotenoid antenna. Science 309, 20612064.
  • 2
    Béjà, O., E. N. Spudich, J. L. Spudich, M. Leclerc and E. F. DeLong (2001) Proteorhodopsin phototrophy in the ocean. Nature, 411, 786789.
  • 3
    Béjà, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. B. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich and E. F. DeLong (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289, 19021906.
  • 4
    Klare, J. P., V. I. Godeliy, J. Labahn, G. Buldt, H-J. Steihoff and M. Engelhard (2004) The archaeal sensory rhodopsinII/transducer complex: A model for transmembrane signal transfer. FEBS Lett. 564, 219224.
  • 5
    Kyndt, J. A., T. E. Meyer and M. A. Cusanovich (2004) Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria. Photochem. Photobiol. Sci. 3, 519530.
  • 6
    Schertler, G. F. (2005) Structure of rhodopsin and the metarhodopsin I photointermediate. Curr. Opin. Struct. Biol. 15, 408415.
  • 7
    Spudich, J. L., C. Yang, K. H. Jung and E. N. Spudich (2000) Retinylidene proteins: Structures and functions from archaea to humans. Annu. Rev. Cell Dev. Biol. 16, 365392.
  • 8
    Van Der Horst, M. A. and K. J. Hellingwerf (2004) Photoreceptor proteins,“star actors of modern times”: A review of the functional dynamics in the structure of representative members of six different photoreceptor families. Acc. Chem. Res. 37, 1320.
  • 9
    Spudich, J. L. and K. H. Jung (2005) Microbial rhodopsins: Phylogenetic and functional diversity. In Handbook of Photosensory Receptors (Edited by W. R.Briggs and J. L.Spudich), pp. 124. Wiley-VCH.
  • 10
    Waschuk, S. A., A. G. Bezerra Jr., L. Shi and L. S. Brown (2005) Leptosphaeria rhodopsin: Bacteriorhodopsin-like proton pump from a eukaryote. Proc. Natl Acad. Sci. USA 102, 68796883.
  • 11
    Brown, L. S. and K. H. Jung (2006) Bacteriorhodopsin-like proteins of eubacteria and fungi: The extent of conservation of the haloarchaeal proton-pumping mechanism. Photochem. Photobiol. Sci. 5, 538546.
  • 12
    Ebrey, T. (2002) A new type of photoreceptor in algae. Proc. Natl Acad. Sci. USA, 99, 84638464.
  • 13
    Jung, K. H. and J. L. Spudich (2004) Microbial rhodopsins: Transport and sensory proteins throughout the three domains of life. Section II Photobiology. In CRC Handbook of Organic Photochemistry and Photobiology, 2nd edn, Vol. 3 (Edited by W. M.Horspool and F.Lenci), pp. 111. CRC Press, Bo Raton, FL.
  • 14
    Wang, W. W., O. A. Sineshchekov, E. N. Spudich and J. L. Spudich (2003) Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin. J. Biol. Chem. 278, 3398533991.
  • 15
    Jung, K. H., V. D. Trivedi and J. L. Spudich (2003) Demonstration of a sensory rhodopsin in eubacteria. Mol. Microbiol. 47, 15131522.
  • 16
    Kolbe, M., H. Besir, L. O. Essen and D. Oesterhelt (2000) Structure of the light-driven chloride pump halorhodopsin at 1.8 Å resolution. Science, 288, 13901396.
  • 17
    Oesterhelt, D. (1998) The structure and mechanism of the family of retinal proteins from halophilic archaea. Curr. Opinion Struct. Biol. 8, 489500.
  • 18
    Hoff, W. D., K. H. Jung and J. L. Spudich (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins. Annu. Rev. Biophys. Biomol. Struct., 26, 223258.
  • 19
    Kamo, N., K. Shimono, M. Iwamoto and Y. Sudo (2001) Photochemistry and photoinduced protontransfer by pharaonis phoborhodopsin. Biochemistry (Moscow) 66, 12771282.
  • 20
    Nagel, G., D. Ollig, M. Fuhrmann, S. Kateriya, A. M. Musti, E. Bamberg and P. Hegemann (2002) Channel rhodopsin-1, a light-gated proton channel in green algae. Science, 28, 23952398.
  • 21
    Nagel, G., T. Szellas, W. Huhn, S. Kateriya, N. Adeishvili, P. Berthold, D. Pllig, P. Hegemann and E. Bamberg (2003) Channel rhodopsin-2, a directly light-gated cation-selective membrane channel. Proc. Natl Acad. Sci. USA, 100, 1394013945.
  • 22
    Sineshchekov, O. A., E. G. Govorunova, K. H. Jung, S. Zauner, U. G. Maier and J. L. Spudich (2005) Rhodopsin-mediated photoreception in cryptophyte flagellates. Biophys. J. 89, 43744381.
  • 23
    Sineshchekov, O. A., K. H. Jung and J. L. Spudich (2002) Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii. Proc. Natl Acad. Sci. USA 99, 86898694.
  • 24
    Govorunova, E. G., K. H. Jung, O. A. Sineshchekov and J. L. Spudich (2004) Chlamydomonas sensory rhodopsins A and B: Cellular content and role in photophobic responses. Biophys. J. 86, 23422349.
  • 25
    Nagel, G., T. Szellas, S. Kateriya, N. Adeishvili, P. Hegemann and E. Bamberg (2005) Channel rhodopsin: Directly light-gated cation channels. Biochem. Soc. Trans. 33, 863866.
  • 26
    Govorunova, E. G., K. H. Jung and O. A. Sineshchekov (2004) Phototaxis of the green algae: The new class of rhodopsin receptors. Biofizika. 49, 278293.
  • 27
    Kateriya, S., G. Nagel, E. Bamberg and P. Hegemann (2004) “Vision” in single-celled algae. News Physiol. Sci. 19, 133137.
  • 28
    Gartner, W. and A. Losi (2003) Crossing the borders: Archaeal rhodopsins go bacterial. Trends Microbiol. 11, 405407.
  • 29
    Furutani, Y., A. Kawanabe, K. H. Jung and H. Kandori (2005) FTIR spectroscopy of the all-trans form of Anabaena sensory rhodopsin at 77K: Hydrogen bond of a water between the Schiff base and Asp75. Biochemistry 44, 1228712296.
  • 30
    Shi, L., S. R. Yoon, A. G. Bezerra Jr, K. H. Jung and L. S. Brown (2006) Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: Implications for signaling mechanism. J. Mol. Biol. 358, 686700.
  • 31
    Sineshchekov, O. A., V. D. Trivedi, J. Sasaki and J. L. Spudich (2005) Photochromicity of Anabaena sensory rhodopsin, an atypical microbial receptor with a cis-retinal light-adapted form. J. Biol. Chem. 280, 1466314668.
  • 32
    Vogeley, L., O. A. Sineshchekov, V. D. Trivedi, J. Sasaki, J. L. Spudich and H. Leucke (2004) Anabaena sensory rhodopsin: A photochromic color sensor at 2.0A. J. Biol. Chem. 280, 1466314668.
  • 33
    Grossman, A. R., D. Bhaya and Q. He (2001) Tracking the light environment by cyanobacteria and the dynamic nature of light harvesting. J. Biol. Chem. 279, 1144911452.
  • 34
    Mullineaux, C. W. (2001) How do cyanobacteria sense and respond to light? Mol. Microbiol. 41, 965971.
  • 35
    Ihara, K., T. Umemura, I. Kitajima-Ihara, Y. Sugiyama, Y. Kimura and Y. Mukohata (1999) Evolution of the archaeal rhodopsins: Evolution rate changes by gene duplication and functional differentiation. J. Mol. Biol. 285, 163174.
  • 36
    Sabehi, G., A. Loy, K. H. Jung, R. Partha, J. L. Spudich, T. Isaacson, J. Hirschberg, M. Wagner and O. Béjà (2005) New insights into metabolic properties of marine bacteria encoding proteorhodopsins. PLoS Biol. 3, e273.
  • 37
    Ruiz-Gonzalez, M. X. and I. Marin (2004) New insights into the evolutionary history of type 1 rhodopsins. J. Mol. Evol. 58, 348358.
  • 38
    Bi, A., J. Cui, Y. P. Ma, E. Olshevskaya, M. Pu, A. M. Dizhoor and Z. H. Pan (2006) Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration. Neuron 50, 2333.
  • 39
    Boyden, E. S., F. Zhang, E. Bamberg, G. Nagel and K. Deisseroth (2005) Milisecond-timescale, genetically targeted optical control of neural activity. Nat. Neurosci. 8, 12631268.
  • 40
    Ishizuka, T., M. Kakuda, R. Araki and H. Yawo (2006) Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels. Neurosci. Res. 54, 8594.
  • 41
    Li, X., D. V. Gutierrez, M. G. Hanson, J. Han, M. D. Mark, H. Chiel, P. Hegemann, L. T. Landmesser and S. Herlitze (2005) Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin. Proc. Natl Acad. Sci. USA 102, 1781617821.
  • 42
    Suzuki, T., K. Yamasaki, S. Fujita, K. Oda, M. Iseki, K. Yoshida, M. Watanabe, H. Daiyasu, H. Toh, E. Asamizu, S. Tabata, K. Miura, H. Fukuzawa, S. Nakamura and T. Takahashi (2003) Archaeal-type rhodopsins in Chlamydomonas: Model structure and intracellular localization. Biochem. Biophys. Res. Commun. 301, 711717.
  • 43
    Olson, K. D. and J. L. Spudich (1993) Removal of the transducer protein from sensory rhodopsin I exposes sites of proton release and uptake during the receptor photocycle. Biophys. J. 62, 25782585.
  • 44
    Jung, K. H. and J. L. Spudich (1998) Suppressor mutation analysis of the sensory rhodopsin I-transducer complex: Insights into the color-sensing mechanism. J. Bacteriol. 180, 20332042.
  • 45
    Spudich, J. L. and R. A Bogomolni (1984) Mechanism of colour discrimination by a bacterial sensory rhodopsin. Nature 312, 509513.
  • 46
    Rudolph, J., N. Tolliday, C. Schmitt, S. C. Schuster and D. Oesterhelt (1995) Phosphorylation in halobacterial signal transduction. EMBO J. 14, 42494257.
  • 47
    Sasaki, J. and J. L. Spudich (2000) Proton transport by sensory rhodopsins and its modulation by transducer-binding. Biochim. Biophys. Acta 1460, 230239.
  • 48
    Schmies, G., B. Lüttenberg, I. Chizhov, M. Engelhard, A. Becker and E. Bamberg (2000) Sensory rhodopsin II from the haloalkaliphilic Natronobacterium pharaonis: Light-activated proton transfer reactions. Biophys. J. 78, 959966.
  • 49
    Seidel, R., B. Scharf, M. Gautel, K. Kleine, D. Oesterhelt and M. Engelhard (1995) The primary structure of sensory rhodopsin II: A member of an additional retinal protein subgroup is coexpressed with its transducer, the halobacterial transducer of rhodopsin II. Proc. Natl Acad. Sci. USA 92, 30363040.
  • 50
    Takahashi, T., H. Tomioka, N. Kamo and Y. Kobatake (1985) A photosystem other than PS370 also mediates the negative phototaxis of Halobacterium halobium. FEMS Microbiol. Lett. 28, 161164.
  • 51
    Moukhametzianov, R., J. P. Klare, R. Efremov, C. Baeken, A. Goppner, J. Labahn, M. Elgelhard, G. Buldt and V. I. Gordeliy (2006) Development of the signal in sensory rhodopsin and its transfer to the cognate transducer. Nature 440, 115119.
  • 52
    Spudich, J. L. and H. Leucke (2002) Sensory rhodopsin II: Functional insights from structure. Curr. Opin. Struct. Biol. 12, 540546.
  • 53
    Bergo, V. B., M. Ntefidou, V. D. Trivedi, J. J. Amsden, J. M. Kralj, K. J. Rothschild and J. L. Spudich (2006) Conformational changes in the photocycle of Anabaena sensory rhodopsin: Absence of the Schiff base counterion protonation signal. J. Biol. Chem. 281, 1520815214.
  • 54
    Sineshchekov, O. A. and J. L. Spudich (2004) Light-induced intramolecular charge movements in microbial rhodopsins in intact E. coli cells. Photochem. Photobiol. Sci. 3, 548554.
  • 55
    Hegemann, P., S. Ehlenbeck and D. Gradmann (2005) Multiple photocycles of channelrhodopsin. Biophys. J. 89, 39113918.
  • 56
    Yao, V. J. and J. L. Spudich (1992) Primary structure of an archaebacterial transducer, a methyl-accepting protein associated with sensory rhodopsin I. Proc. Natl Acad. Sci. USA. 89, 1191511919.
  • 57
    Luttenberg, B., E. K. Wolff and M. Engelhard (1998) Heterologous coexpression og the blue light receptor psRII and its transducer pHtrII from Natrobacterium pharaonis in the Halobacterium salinarium strain Pho81/w restores negative phototaxis. FEBS Lett. 426, 117120.
  • 58
    Ng, W. V., S. P. Kennedy, G. G. Mahairas, B. Berquist, M. Pan, H. D. Shukla, S. R. Lasky, N. S. Baliga, V. Thorsson, J. Sbrogna, S. Swartzell, D. Weir, J. Hall, T. A. Dahl, R. Welti, Y. A. Goo, B. Leithauser, K. Keller, R. Cruz, M. J. Danson, D. W. Hough and D. Maddocks (2000) Genome sequence of Halobacterium species NRC-1. Proc. Natl Acad. Sci. USA 97, 1217612181.
  • 59
    Zhang, X. N., J. Zhu and J. L. Spudich (1999) The specificity of interaction of archaeal transducers with their cognate sensory rhodopsins is determined by their transmembrane helices. Proc. Natl Acad. Sci. USA 96, 857862.
  • 60
    Gordeliy, V. I., J. Labahn, R. Moukhametzianov, R. Efremov, J. Granzin, R. Schlesinger, G. Buldt, T. Savopol, A. J. Scheidig, J. P. Klare and M. Engelhard (2002) Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex. Nature 419, 484487.
  • 61
    Luecke, H., B. Schobert, J. K. Lanyi, E. N. Spudich and J. L. Spudich (2001) Crystal structure of sensory rhodopsin II at 2.4 angstroms: Insights into color tuning and transducer interaction. Science, 293, 14991503.
  • 62
    Bordignon, E., J. P. Klare, M. Doebber, A. A. Wegener, S. Martell, M. Engelhard and H. J. Steinhoff (2005) Structural analysis of a HAMP domain: The linker region of the phototransducer in complex with sensory rhodopsin II. J. Biol. Chem. 18, 3876738775.
  • 63
    Sudo, Y., H. Okuda, M. Yamabi, Y. Fukuzaki, M. Mishima, N. Kamo and C. Kojima (2005) Linker region of a halobacterial transducer protein interacts directly with its sensor retinal protein. Biochemistry 44, 61446152.
  • 64
    Yang, C. S., O. A. Sineshchekov, E. N. Spudich and J. L. Spudich (2004) The cytoplasmic membrane-proximal domain of the HtrII transducer interacts with the E-F loop of photoactivated Natronomonas pharaonis sensory rhodopsin II. J. Biol. Chem. 279, 4297042976.
  • 65
    Vogeley, L. and H. Luecke (2006) Crystallization, X-ray diffraction analysis and SIRAS/molecular-replacement phasing of three crystal forms of Anabaena sensory rhodopsin transducer. Acta Crystallograph Sect. F. Struct. Biol. Cryst. Commun. 62, 388391.